Jasper D. Rine - Publications

Molecular and Cell Biology University of California, Berkeley, Berkeley, CA 
Genetics, Genomics and Development

89 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 McCleary DF, Rine J. Nutritional Control of Chronological Aging and Heterochromatin in . Genetics. 205: 1179-1193. PMID 28064165 DOI: 10.1534/genetics.116.196485  0.4
2016 Dodson AE, Rine J. Donor Preference Meets Heterochromatin: Moonlighting Activities of a Recombinational Enhancer in Saccharomyces cerevisiae. Genetics. 204: 1065-1074. PMID 27655944 DOI: 10.1534/genetics.116.194696  0.4
2016 Marini NJ, Yang W, Asrani K, Witte JS, Rine J, Lammer EJ, Shaw GM. Sequence variation in folate pathway genes and risks of human cleft lip with or without cleft palate. American Journal of Medical Genetics. Part A. PMID 27604992 DOI: 10.1002/ajmg.a.37874  1
2016 Thurtle-Schmidt DM, Dodson AE, Rine J. Histone Deacetylases with Antagonistic Roles in Saccharomyces cerevisiae Heterochromatin Formation. Genetics. 204: 177-90. PMID 27489001 DOI: 10.1534/genetics.116.190835  0.4
2016 McCleary DF, Steakley DL, Rine J. Sir Protein-Independent Repair of Dicentric Chromosomes in Saccharomyces cerevisiae. Molecular Biology of the Cell. PMID 27466318 DOI: 10.1091/mbc.E16-02-0102  0.72
2016 Liu TY, Dodson AE, Terhorst J, Song YS, Rine J. Riches of phenotype computationally extracted from microbial colonies. Proceedings of the National Academy of Sciences of the United States of America. PMID 27140647 DOI: 10.1073/pnas.1523295113  0.4
2016 Ellahi A, Rine J. Evolution and Functional Trajectory of Sir1 in Gene Silencing. Molecular and Cellular Biology. 36: 1164-79. PMID 26811328 DOI: 10.1128/MCB.01013-15  0.6
2015 Janke R, Dodson AE, Rine J. Metabolism and epigenetics. Annual Review of Cell and Developmental Biology. 31: 473-496. PMID 26359776 DOI: 10.1146/annurev-cellbio-100814-125544  0.4
2015 Rine J, Fagen AP. The State of Federal Research Funding in Genetics as Reflected by Members of the Genetics Society of America. Genetics. 200: 1015-9. PMID 26178966 DOI: 10.1534/genetics.115.179523  1
2015 Steakley DL, Rine J. On the Mechanism of Gene Silencing in Saccharomyces cerevisiae. G3 (Bethesda, Md.). 5: 1751-63. PMID 26082137 DOI: 10.1534/g3.115.018515  1
2015 Ellahi A, Thurtle DM, Rine J. The Chromatin and Transcriptional Landscape of Native Saccharomyces cerevisiae Telomeres and Subtelomeric Domains. Genetics. 200: 505-21. PMID 25823445 DOI: 10.1534/genetics.115.175711  1
2015 Dodson AE, Rine J. Heritable capture of heterochromatin dynamics in Saccharomyces cerevisiae. Elife. 4: e05007. PMID 25581000 DOI: 10.7554/eLife.05007  0.4
2015 Lombardi LM, Davis MD, Rine J. Maintenance of nucleosomal balance in cis by conserved AAA-ATPase Yta7. Genetics. 199: 105-16. PMID 25406467 DOI: 10.1534/genetics.114.168039  1
2014 Sadhu MJ, Moresco JJ, Zimmer AD, Yates JR, Rine J. Multiple inputs control sulfur-containing amino acid synthesis in Saccharomyces cerevisiae. Molecular Biology of the Cell. 25: 1653-65. PMID 24648496 DOI: 10.1091/mbc.E13-12-0755  1
2014 Rine J. A future of the model organism model. Molecular Biology of the Cell. 25: 549-53. PMID 24577733 DOI: 10.1091/mbc.E12-10-0768  0.32
2014 Thurtle DM, Rine J. The molecular topography of silenced chromatin in Saccharomyces cerevisiae. Genes & Development. 28: 245-58. PMID 24493645 DOI: 10.1101/gad.230532.113  1
2013 Sadhu MJ, Guan Q, Li F, Sales-Lee J, Iavarone AT, Hammond MC, Cande WZ, Rine J. Nutritional control of epigenetic processes in yeast and human cells. Genetics. 195: 831-44. PMID 23979574 DOI: 10.1534/genetics.113.153981  1
2013 Dimster-Denk D, Tripp KW, Marini NJ, Marqusee S, Rine J. Mono and dual cofactor dependence of human cystathionine β-synthase enzyme variants in vivo and in vitro. G3 (Bethesda, Md.). 3: 1619-28. PMID 23934999 DOI: 10.1534/g3.113.006916  1
2012 Teytelman L, Osborne Nishimura EA, Özaydin B, Eisen MB, Rine J. The enigmatic conservation of a Rap1 binding site in the Saccharomyces cerevisiae HMR-E silencer. G3 (Bethesda, Md.). 2: 1555-62. PMID 23275878 DOI: 10.1534/g3.112.004077  1
2012 Zill OA, Scannell DR, Kuei J, Sadhu M, Rine J. Evolutionary analysis of heterochromatin protein compatibility by interspecies complementation in Saccharomyces. Genetics. 192: 1001-14. PMID 22923378 DOI: 10.1534/genetics.112.141549  1
2012 Mayfield JA, Davies MW, Dimster-Denk D, Pleskac N, McCarthy S, Boydston EA, Fink L, Lin XX, Narain AS, Meighan M, Rine J. Surrogate genetics and metabolic profiling for characterization of human disease alleles. Genetics. 190: 1309-23. PMID 22267502 DOI: 10.1534/genetics.111.137471  1
2012 Zunder RM, Antczak AJ, Berger JM, Rine J. Two surfaces on the histone chaperone Rtt106 mediate histone binding, replication, and silencing. Proceedings of the National Academy of Sciences of the United States of America. 109: E144-53. PMID 22198837 DOI: 10.1073/pnas.1119095109  1
2011 Marini NJ, Hoffmann TJ, Lammer EJ, Hardin J, Lazaruk K, Stein JB, Gilbert DA, Wright C, Lipzen A, Pennacchio LA, Carmichael SL, Witte JS, Shaw GM, Rine J. A genetic signature of spina bifida risk from pathway-informed comprehensive gene-variant analysis. Plos One. 6: e28408. PMID 22140583 DOI: 10.1371/journal.pone.0028408  1
2011 Lombardi LM, Ellahi A, Rine J. Direct regulation of nucleosome density by the conserved AAA-ATPase Yta7. Proceedings of the National Academy of Sciences of the United States of America. 108: E1302-11. PMID 22074782 DOI: 10.1073/pnas.1116819108  1
2011 Osborne EA, Hiraoka Y, Rine J. Symmetry, asymmetry, and kinetics of silencing establishment in Saccharomyces cerevisiae revealed by single-cell optical assays. Proceedings of the National Academy of Sciences of the United States of America. 108: 1209-16. PMID 21262833 DOI: 10.1073/pnas.1018742108  0.84
2010 Zill OA, Scannell D, Teytelman L, Rine J. Co-evolution of transcriptional silencing proteins and the DNA elements specifying their assembly. Plos Biology. 8: e1000550. PMID 21151344 DOI: 10.1371/journal.pbio.1000550  1
2010 Mayfield JA, Fontana MF, Rine J. Genetic control of immune cell types in fungal disease. Proceedings of the National Academy of Sciences of the United States of America. 107: 22202-6. PMID 21135228 DOI: 10.1073/pnas.1012925108  1
2010 Halley JE, Kaplan T, Wang AY, Kobor MS, Rine J. Roles for H2A.Z and its acetylation in GAL1 transcription and gene induction, but not GAL1-transcriptional memory. Plos Biology. 8: e1000401. PMID 20582323 DOI: 10.1371/journal.pbio.1000401  1
2010 Marini NJ, Thomas PD, Rine J. The use of orthologous sequences to predict the impact of amino acid substitutions on protein function. Plos Genetics. 6: e1000968. PMID 20523748 DOI: 10.1371/journal.pgen.1000968  1
2010 Ozaydin B, Rine J. Expanded roles of the origin recognition complex in the architecture and function of silenced chromatin in Saccharomyces cerevisiae. Molecular and Cellular Biology. 30: 626-39. PMID 19948882 DOI: 10.1128/MCB.00614-09  0.36
2009 Teytelman L, Ozaydin B, Zill O, Lefrançois P, Snyder M, Rine J, Eisen MB. Impact of chromatin structures on DNA processing for genomic analyses. Plos One. 4: e6700. PMID 19693276 DOI: 10.1371/journal.pone.0006700  1
2009 Osborne EA, Dudoit S, Rine J. The establishment of gene silencing at single-cell resolution. Nature Genetics. 41: 800-6. PMID 19543267 DOI: 10.1038/ng.402  1
2009 Gallagher JE, Babiarz JE, Teytelman L, Wolfe KH, Rine J. Elaboration, diversification and regulation of the Sir1 family of silencing proteins in Saccharomyces. Genetics. 181: 1477-91. PMID 19171939 DOI: 10.1534/genetics.108.099663  1
2008 Teytelman L, Eisen MB, Rine J. Silent but not static: accelerated base-pair substitution in silenced chromatin of budding yeasts. Plos Genetics. 4: e1000247. PMID 18989454 DOI: 10.1371/journal.pgen.1000247  1
2008 Chao LY, Rine J, Marletta MA. Spectroscopic and kinetic studies of Nor1, a cytochrome P450 nitric oxide reductase from the fungal pathogen Histoplasma capsulatum. Archives of Biochemistry and Biophysics. 480: 132-7. PMID 18804446 DOI: 10.1016/j.abb.2008.09.001  1
2008 Zill OA, Rine J. Interspecies variation reveals a conserved repressor of alpha-specific genes in Saccharomyces yeasts. Genes & Development. 22: 1704-16. PMID 18559484 DOI: 10.1101/gad.1640008  1
2008 Chao LY, Marletta MA, Rine J. Sre1, an iron-modulated GATA DNA-binding protein of iron-uptake genes in the fungal pathogen Histoplasma capsulatum. Biochemistry. 47: 7274-83. PMID 18549241 DOI: 10.1021/bi800066s  1
2008 Marini NJ, Gin J, Ziegle J, Keho KH, Ginzinger D, Gilbert DA, Rine J. The prevalence of folate-remedial MTHFR enzyme variants in humans Proceedings of the National Academy of Sciences of the United States of America. 105: 8055-8060. PMID 18523009 DOI: 10.1073/pnas.0802813105  1
2007 Jeong H, Herskowitz I, Kroetz DL, Rine J. Function-altering SNPs in the human multidrug transporter gene ABCB1 identified using a Saccharomyces-based assay. Plos Genetics. 3: e39. PMID 17352537 DOI: 10.1371/journal.pgen.0030039  1
2006 Davies BS, Rine J. A role for sterol levels in oxygen sensing in Saccharomyces cerevisiae. Genetics. 174: 191-201. PMID 16783004 DOI: 10.1534/genetics.106.059964  0.4
2006 Babiarz JE, Halley JE, Rine J. Telomeric heterochromatin boundaries require NuA4-dependent acetylation of histone variant H2A.Z in Saccharomyces cerevisiae. Genes & Development. 20: 700-10. PMID 16543222 DOI: 10.1101/gad.1386306  1
2005 Olaharski AJ, Rine J, Marshall BL, Babiarz J, Zhang L, Verdin E, Smith MT. The flavoring agent dihydrocoumarin reverses epigenetic silencing and inhibits sirtuin deacetylases Plos Genetics. 1: e77. PMID 16362078 DOI: 10.1371/journal.pgen.0010077  1
2005 Rine J. Cell biology. Twists in the tale of the aging yeast. Science (New York, N.Y.). 310: 1124-5. PMID 16293743 DOI: 10.1126/science.1121310  0.32
2005 Davies BS, Wang HS, Rine J. Dual activators of the sterol biosynthetic pathway of Saccharomyces cerevisiae: similar activation/regulatory domains but different response mechanisms. Molecular and Cellular Biology. 25: 7375-85. PMID 16055745 DOI: 10.1128/MCB.25.16.7375-7385.2005  0.4
2004 Suter B, Tong A, Chang M, Yu L, Brown GW, Boone C, Rine J. The origin recognition complex links replication, sister chromatid cohesion and transcriptional silencing in Saccharomyces cerevisiae. Genetics. 167: 579-91. PMID 15238513 DOI: 10.1534/genetics.103.024851  1
2004 Kobor MS, Venkatasubrahmanyam S, Meneghini MD, Gin JW, Jennings JL, Link AJ, Madhani HD, Rine J. A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin. Plos Biology. 2: E131. PMID 15045029 DOI: 10.1371/journal.pbio.0020131  1
2003 Hwang L, Hocking-Murray D, Bahrami AK, Andersson M, Rine J, Sil A. Identifying phase-specific genes in the fungal pathogen Histoplasma capsulatum using a genomic shotgun microarray. Molecular Biology of the Cell. 14: 2314-26. PMID 12808032 DOI: 10.1091/mbc.E03-01-0027  0.64
2003 Rusche LN, Kirchmaier AL, Rine J. The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae. Annual Review of Biochemistry. 72: 481-516. PMID 12676793 DOI: 10.1146/annurev.biochem.72.121801.161547  1
2002 Rusché LN, Kirchmaier AL, Rine J. Ordered nucleation and spreading of silenced chromatin in Saccharomyces cerevisiae. Molecular Biology of the Cell. 13: 2207-22. PMID 12134062 DOI: 10.1091/mbc.E02-03-0175  1
2002 Garber PM, Rine J. Overlapping roles of the spindle assembly and DNA damage checkpoints in the cell-cycle response to altered chromosomes in Saccharomyces cerevisiae. Genetics. 161: 521-34. PMID 12072451  1
2001 Vik A, Rine J. Upc2p and Ecm22p, dual regulators of sterol biosynthesis in Saccharomyces cerevisiae. Molecular and Cellular Biology. 21: 6395-405. PMID 11533229 DOI: 10.1128/MCB.21.19.6395-6405.2001  1
2001 Kirchmaier AL, Rine J. DNA replication-independent silencing in S. cerevisiae Science. 291: 646-650. PMID 11158676 DOI: 10.1126/science.291.5504.646  1
2000 Vik A, Rine J. Membrane biology: membrane-regulated transcription. Current Biology : Cb. 10: R869-71. PMID 11114535 DOI: 10.1016/S0960-9822(00)00822-8  1
2000 Trueblood CE, Boyartchuk VL, Picologlou EA, Rozema D, Poulter CD, Rine J. The CaaX proteases, Afc1p and Rce1p, have overlapping but distinct substrate specificities. Molecular and Cellular Biology. 20: 4381-92. PMID 10825201 DOI: 10.1128/MCB.20.12.4381-4392.2000  1
1999 Ehrenhofer-Murray AE, Kamakaka RT, Rine J. A role for the replication proteins PCNA, RF-C, polymerase epsilon and Cdc45 in transcriptional silencing in Saccharomyces cerevisiae. Genetics. 153: 1171-82. PMID 10545450  1
1999 Neff MW, Broman KW, Mellersh CS, Ray K, Acland GM, Aguirre GD, Ziegle JS, Ostrander EA, Rine J. A second-generation genetic linkage map of the domestic dog, Canis familiaris Genetics. 151: 803-820. PMID 9927471  1
1999 Gardner KA, Rine J, Fox CA. A region of the Sir1 protein dedicated to recognition of a silencer and required for interaction with the Orc1 protein in saccharomyces cerevisiae. Genetics. 151: 31-44. PMID 9872946  1
1998 Kamakaka RT, Rine J. Sir- and silencer-independent disruption of silencing in Saccharomyces by Sas10p. Genetics. 149: 903-14. PMID 9611201  0.76
1998 Dillin A, Rine J. Roles for ORC in M phase and S phase Science. 279: 1733-1737. PMID 9497294 DOI: 10.1126/science.279.5357.1733  1
1997 Dillin A, Rine J. Separable functions of ORC5 in replication initiation and silencing in Saccharomyces cerevisiae Genetics. 147: 1053-1062. PMID 9383052  1
1997 Whistler JL, Rine J. Ras2 and Ras1 protein phosphorylation in Saccharomyces cerevisiae. The Journal of Biological Chemistry. 272: 18790-800. PMID 9228053 DOI: 10.1074/jbc.272.30.18790  1
1997 Fox CA, Ehrenhofer-Murray AE, Loo S, Rine J. The origin recognition complex, SIR1, and the S phase requirement for silencing Science. 276: 1547. PMID 9171055 DOI: 10.1126/science.276.5318.1547  1
1997 Yalovsky S, Trueblood CE, Callan KL, Narita JO, Jenkins SM, Rine J, Gruissem W. Plant farnesyltransferase can restore yeast Ras signaling and mating Molecular and Cellular Biology. 17: 1986-1994. PMID 9121446  1
1997 Ehrenhofer-Murray AE, Rivier DH, Rine J. The role of Sas2, an acetyltransferase homologue of Saccharomyces cerevisiae, in silencing and ORC function. Genetics. 145: 923-34. PMID 9093847  1
1997 Issel-Tarver L, Rine J. The evolution of mammalian olfactory receptor genes. Genetics. 145: 185-95. PMID 9017400  0.48
1996 Issel-Tarver L, Rine J. Organization and expression of canine olfactory receptor genes. Proceedings of the National Academy of Sciences of the United States of America. 93: 10897-902. PMID 8855279  0.48
1996 Dimster-Denk D, Rine J. Transcriptional regulation of a sterol-biosynthetic enzyme by sterol levels in Saccharomyces cerevisiae. Molecular and Cellular Biology. 16: 3981-9. PMID 8754796  0.48
1996 Fox CA, Rine J. Influences of the cell cycle on silencing Current Opinion in Cell Biology. 8: 354-357. PMID 8743886 DOI: 10.1016/S0955-0674(96)80009-3  1
1996 Hampton RY, Koning A, Wright R, Rine J. In vivo examination of membrane protein localization and degradation with green fluorescent protein Proceedings of the National Academy of Sciences of the United States of America. 93: 828-833. PMID 8570643 DOI: 10.1073/pnas.93.2.828  1
1995 Loo S, Rine J. Silencing and heritable domains of gene expression. Annual Review of Cell and Developmental Biology. 11: 519-48. PMID 8689568 DOI: 10.1146/annurev.cb.11.110195.002511  1
1995 Parrish ML, Sengstag C, Rine JD, Wright RL. Identification of the sequences in HMG-CoA reductase required for karmellae assembly. Molecular Biology of the Cell. 6: 1535-47. PMID 8589454  1
1995 Loo S, Laurenson P, Foss M, Dillin A, Rine J. Roles of ABF1, NPL3, and YCL54 in silencing in Saccharomyces cerevisiae Genetics. 141: 889-902. PMID 8582634  1
1995 Fox CA, Loo S, Dillin A, Rine J. The origin recognition complex has essential functions in transcriptional silencing and chromosomal replication Genes and Development. 9: 911-924. PMID 7774809  1
1995 Dimster-Denk D, Schafer WR, Rine J. Control of RAS mRNA level by the mevalonate pathway. Molecular Biology of the Cell. 6: 59-70. PMID 7749195  1
1995 Dillin A, Rine J. On the origin of a silencer Trends in Biochemical Sciences. 20: 231-235. PMID 7631420 DOI: 10.1016/S0968-0004(00)89023-4  1
1995 Loo S, Fox CA, Rine J, Kobayashi R, Stillman B, Bell S. The origin recognition complex in silencing, cell cycle progression, and DNA replication Molecular Biology of the Cell. 6: 741-756. PMID 7579692  1
1995 Ehrenhofer-Murray AE, Gossen M, Pak DT, Botchan MR, Rine J. Separation of origin recognition complex functions by cross-species complementation. Science (New York, N.Y.). 270: 1671-4. PMID 7502078  1
1994 Loo S, Rine J. Silencers and domains of generalized repression. Science (New York, N.Y.). 264: 1768-71. PMID 8209257  1
1994 Hampton RY, Rine J. Regulated degradation of HMG-CoA reductase, an integral membrane protein of the endoplasmic reticulum, in yeast Journal of Cell Biology. 125: 299-312. PMID 8163547  1
1994 Dimster-Denk D, Thorsness MK, Rine J. Feedback regulation of 3-hydroxy-3-methylglutaryl coenzyme A reductase in Saccharomyces cerevisiae. Molecular Biology of the Cell. 5: 655-65. PMID 7949422  0.48
1993 Foss M, McNally FJ, Laurenson P, Rine J. Origin recognition complex (ORC) in transcriptional silencing and DNA replication in S. cerevisiae Science. 262: 1838-1844. PMID 8266071  1
1993 Fox CA, Loo S, Rivier DH, Foss MA, Rine J. A transcriptional silencer as a specialized origin of replication that establishes functional domains of chromatin Cold Spring Harbor Symposia On Quantitative Biology. 58: 443-455. PMID 7956058  1
1987 Rine J, Herskowitz I. Four genes responsible for a position effect on expression from HML and HMR in Saccharomyces cerevisiae Genetics. 116: 9-22. PMID 3297920  1
1981 Rine J, Sprague GF, Herskowitz I. rme1 Mutation of Saccharomyces cerevisiae: Map position and bypass of mating type locus control of sporulation Molecular and Cellular Biology. 1: 958-960. PMID 7050660  1
1981 Sprague GF, Rine J, Herskowitz I. Control of yeast cell type by the mating type locus. II. Genetic interactions between MATα and unlinked α-specific STE genes Journal of Molecular Biology. 153: 323-335. PMID 7040682 DOI: 10.1016/0022-2836(81)90281-3  1
1981 Rine J, Jensen R, Hagen D, Blair L, Herskowitz I. Pattern of switching and fate of the replaced cassette in yeast mating-type interconversion Cold Spring Harbor Symposia On Quantitative Biology. 45: 951-960. PMID 6266770  1
1981 Sprague GF, Rine J, Herskowitz I. Homology and non-homology at the yeast mating type locus Nature. 289: 250-252. PMID 6256657 DOI: 10.1038/289250a0  1
1980 Rine J, Herskowitz I. The trans action of HMRa in mating type interconversion Mgg Molecular & General Genetics. 180: 99-105. PMID 7003314 DOI: 10.1007/BF00267357  1
1979 Rine J, Strathern JN, Hicks JB, Herskowitz I. A suppressor of mating-type locus mutations in Saccharomyces cerevisiae: Evidence for and identification of cryptic mating-type loci Genetics. 93: 877-901. PMID 397913  1
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