Martin Beck - Publications

Affiliations: 
EMBL Heidelberg 

66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhou Y, Kastritis PL, Dougherty SE, Bouvette J, Hsu AL, Burbaum L, Mosalaganti S, Pfeffer S, Hagen WJH, Förster F, Borgnia MJ, Vogel C, Beck M, Bartesaghi A, Silva GM. Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress. Proceedings of the National Academy of Sciences of the United States of America. PMID 32855298 DOI: 10.1073/Pnas.2005301117  0.48
2020 Buczak K, Kirkpatrick JM, Truckenmueller F, Santinha D, Ferreira L, Roessler S, Singer S, Beck M, Ori A. Spatially resolved analysis of FFPE tissue proteomes by quantitative mass spectrometry. Nature Protocols. PMID 32737464 DOI: 10.1038/S41596-020-0356-Y  0.4
2019 Guo T, Luna A, Rajapakse VN, Koh CC, Wu Z, Liu W, Sun Y, Gao H, Menden MP, Xu C, Calzone L, Martignetti L, Auwerx C, Buljan M, Banaei-Esfahani A, ... ... Beck M, et al. Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines. Iscience. 21: 664-680. PMID 31733513 DOI: 10.1016/J.Isci.2019.10.059  0.52
2019 Holzer K, Ori A, Cooke A, Dauch D, Drucker E, Riemenschneider P, Andres-Pons A, DiGuilio AL, Mackmull MT, Baßler J, Roessler S, Breuhahn K, Zender L, Glavy JS, Dombrowski F, ... ... Beck M, et al. Nucleoporin Nup155 is part of the p53 network in liver cancer. Nature Communications. 10: 2147. PMID 31089132 DOI: 10.1038/S41467-019-10133-Z  1
2019 Romanov N, Kuhn M, Aebersold R, Ori A, Beck M, Bork P. Disentangling Genetic and Environmental Effects on the Proteotypes of Individuals. Cell. PMID 31031010 DOI: 10.1016/J.Cell.2019.03.015  0.52
2018 Parca L, Beck M, Bork P, Ori A. Quantifying compartment-associated variations of protein abundance in proteomics data. Molecular Systems Biology. 14: e8131. PMID 29967062 DOI: 10.15252/Msb.20178131  0.4
2018 Mosalaganti S, Kosinski J, Albert S, Schaffer M, Strenkert D, Salomé PA, Merchant SS, Plitzko JM, Baumeister W, Engel BD, Beck M. In situ architecture of the algal nuclear pore complex. Nature Communications. 9: 2361. PMID 29915221 DOI: 10.1038/S41467-018-04739-Y  0.36
2018 Buczak K, Ori A, Kirkpatrick JM, Holzer K, Dauch D, Roessler S, Endris V, Lasitschka F, Parca L, Schmidt A, Zender L, Schirmacher P, Krijgsveld J, Singer S, Beck M. Spatial tissue proteomics quantifies inter- and intra-tumor heterogeneity in hepatocellular carcinoma. Molecular & Cellular Proteomics : McP. PMID 29363612 DOI: 10.1074/Mcp.Ra117.000189  0.44
2018 Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J. Postmitotic nuclear pore assembly proceeds by radial dilation of small membrane openings. Nature Structural & Molecular Biology. 25: 21-28. PMID 29323269 DOI: 10.1038/S41594-017-0001-9  0.32
2017 Mackmull MT, Klaus B, Heinze I, Chokkalingam M, Beyer A, Russell RB, Ori A, Beck M. Landscape of nuclear transport receptor cargo specificity. Molecular Systems Biology. 13: 962. PMID 29254951 DOI: 10.15252/Msb.20177608  0.4
2017 Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko JM, Beck M, Baumeister W, Engel BD. Proteasomes tether to two distinct sites at the nuclear pore complex. Proceedings of the National Academy of Sciences of the United States of America. PMID 29229809 DOI: 10.1073/Pnas.1716305114  0.36
2017 Teimer R, Kosinski J, von Appen A, Beck M, Hurt E. A short linear motif in scaffold Nup145C connects Y-complex with pre-assembled outer ring Nup82 complex. Nature Communications. 8: 1107. PMID 29062044 DOI: 10.1038/S41467-017-01160-9  0.32
2016 Dauden MI, Kosinski J, Kolaj-Robin O, Desfosses A, Ori A, Faux C, Hoffmann NA, Onuma OF, Breunig KD, Beck M, Sachse C, Séraphin B, Glatt S, Müller CW. Architecture of the yeast Elongator complex. Embo Reports. PMID 27974378 DOI: 10.15252/Embr.201643353  0.4
2016 Scharaw S, Iskar M, Ori A, Boncompain G, Laketa V, Poser I, Lundberg E, Perez F, Beck M, Bork P, Pepperkok R. The endosomal transcriptional regulator RNF11 integrates degradation and transport of EGFR. The Journal of Cell Biology. 215: 543-558. PMID 27872256 DOI: 10.1083/Jcb.201601090  0.4
2016 Kiosze-Becker K, Ori A, Gerovac M, Heuer A, Nürenberg-Goloub E, Rashid UJ, Becker T, Beckmann R, Beck M, Tampé R. Structure of the ribosome post-recycling complex probed by chemical cross-linking and mass spectrometry. Nature Communications. 7: 13248. PMID 27824037 DOI: 10.1038/Ncomms13248  0.4
2016 Beck M, Baumeister W. Cryo-Electron Tomography: Can it Reveal the Molecular Sociology of Cells in Atomic Detail? Trends in Cell Biology. PMID 27671779 DOI: 10.1016/J.Tcb.2016.08.006  0.36
2016 Otsuka S, Bui KH, Schorb M, Hossain MJ, Politi AZ, Koch B, Eltsov M, Beck M, Ellenberg J. Nuclear pore assembly proceeds by an inside-out extrusion of the nuclear envelope. Elife. 5. PMID 27630123 DOI: 10.7554/Elife.19071  0.32
2016 Hampoelz B, Mackmull MT, Machado P, Ronchi P, Bui KH, Schieber N, Santarella-Mellwig R, Necakov A, Andrés-Pons A, Philippe JM, Lecuit T, Schwab Y, Beck M. Pre-assembled Nuclear Pores Insert into the Nuclear Envelope during Early Development. Cell. PMID 27397507 DOI: 10.1016/J.Cell.2016.06.015  1
2016 Hoelz A, Glavy JS, Beck M. Toward the atomic structure of the nuclear pore complex: when top down meets bottom up. Nature Structural & Molecular Biology. PMID 27273515 DOI: 10.1038/Nsmb.3244  1
2016 Ferber M, Kosinski J, Ori A, Rashid UJ, Moreno-Morcillo M, Simon B, Bouvier G, Batista PR, Müller CW, Beck M, Nilges M. Automated structure modeling of large protein assemblies using crosslinks as distance restraints. Nature Methods. PMID 27111507 DOI: 10.1038/Nmeth.3838  1
2016 Kosinski J, Mosalaganti S, von Appen A, Teimer R, DiGuilio AL, Wan W, Bui KH, Hagen WJ, Briggs JA, Glavy JS, Hurt E, Beck M. Molecular architecture of the inner ring scaffold of the human nuclear pore complex. Science (New York, N.Y.). 352: 363-5. PMID 27081072 DOI: 10.1126/Science.Aaf0643  1
2016 Ori A, Iskar M, Buczak K, Kastritis P, Parca L, Andrés-Pons A, Singer S, Bork P, Beck M. Spatiotemporal variation of mammalian protein complex stoichiometries. Genome Biology. 17: 47. PMID 26975353 DOI: 10.1186/S13059-016-0912-5  1
2016 von Appen A, Beck M. Structure Determination of the Nuclear Pore Complex with Three-Dimensional Cryo electron Microscopy. Journal of Molecular Biology. 428: 2001-10. PMID 26791760 DOI: 10.1016/J.Jmb.2016.01.004  0.32
2016 Silva-Martin N, Daudén MI, Glatt S, Hoffmann NA, Kastritis P, Bork P, Beck M, Müller CW. The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight into the Overall Architecture of the Dodecameric Rvb1/Rvb2 Complex. Plos One. 11: e0146457. PMID 26745716 DOI: 10.1371/Journal.Pone.0146457  1
2016 Spillner J, Beck M, Schill A, Bohnert TM. Stealth Databases: Ensuring User-Controlled Queries in Untrusted Cloud Environments Proceedings - 2015 Ieee/Acm 8th International Conference On Utility and Cloud Computing, Ucc 2015. 261-270. DOI: 10.1109/UCC.2015.44  1
2015 Ori A, Toyama BH, Harris MS, Bock T, Iskar M, Bork P, Ingolia NT, Hetzer MW, Beck M. Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats. Cell Systems. 1: 224-237. PMID 27135913 DOI: 10.1016/J.Cels.2015.08.012  0.4
2015 Thierry E, Guilligay D, Kosinski J, Bock T, Gaudon S, Round A, Pflug A, Hengrung N, El Omari K, Baudin F, Hart DJ, Beck M, Cusack S. Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains. Molecular Cell. PMID 26711008 DOI: 10.1016/J.Molcel.2015.11.016  1
2015 Poli M, Ori A, Child T, Jaroudi S, Spath K, Beck M, Wells D. Characterization and quantification of proteins secreted by single human embryos prior to implantation. Embo Molecular Medicine. 7: 1465-79. PMID 26471863 DOI: 10.15252/Emmm.201505344  1
2015 von Appen A, Kosinski J, Sparks L, Ori A, DiGuilio AL, Vollmer B, Mackmull MT, Banterle N, Parca L, Kastritis P, Buczak K, Mosalaganti S, Hagen W, Andres-Pons A, Lemke EA, ... ... Beck M, et al. In situ structural analysis of the human nuclear pore complex. Nature. 526: 140-3. PMID 26416747 DOI: 10.1038/Nature15381  1
2015 Deniaud A, Karuppasamy M, Bock T, Masiulis S, Huard K, Garzoni F, Kerschgens K, Hentze MW, Kulozik AE, Beck M, Neu-Yilik G, Schaffitzel C. A network of SMG-8, SMG-9 and SMG-1 C-terminal insertion domain regulates UPF1 substrate recruitment and phosphorylation. Nucleic Acids Research. 43: 7600-11. PMID 26130714 DOI: 10.1093/Nar/Gkv668  1
2015 Male G, von Appen A, Glatt S, Taylor NM, Cristovao M, Groetsch H, Beck M, Müller CW. Architecture of TFIIIC and its role in RNA polymerase III pre-initiation complex assembly. Nature Communications. 6: 7387. PMID 26060179 DOI: 10.1038/Ncomms8387  1
2015 Hurt E, Beck M. Towards understanding nuclear pore complex architecture and dynamics in the age of integrative structural analysis. Current Opinion in Cell Biology. 34: 31-38. PMID 25938906 DOI: 10.1016/J.Ceb.2015.04.009  1
2015 Calviño FR, Kharde S, Ori A, Hendricks A, Wild K, Kressler D, Bange G, Hurt E, Beck M, Sinning I. Symportin 1 chaperones 5S RNP assembly during ribosome biogenesis by occupying an essential rRNA-binding site. Nature Communications. 6: 6510. PMID 25849277 DOI: 10.1038/Ncomms7510  1
2015 Mackmull MT, Iskar M, Parca L, Singer S, Bork P, Ori A, Beck M. Histone Deacetylase Inhibitors (HDACi) Cause the Selective Depletion of Bromodomain Containing Proteins (BCPs). Molecular & Cellular Proteomics : McP. 14: 1350-60. PMID 25755299 DOI: 10.1074/Mcp.M114.042499  1
2015 Kosinski J, von Appen A, Ori A, Karius K, Müller CW, Beck M. Xlink Analyzer: software for analysis and visualization of cross-linking data in the context of three-dimensional structures. Journal of Structural Biology. 189: 177-83. PMID 25661704 DOI: 10.1016/J.Jsb.2015.01.014  1
2015 Gaik M, Flemming D, von Appen A, Kastritis P, Mücke N, Fischer J, Stelter P, Ori A, Bui KH, Baßler J, Barbar E, Beck M, Hurt E. Structural basis for assembly and function of the Nup82 complex in the nuclear pore scaffold. The Journal of Cell Biology. 208: 283-97. PMID 25646085 DOI: 10.1083/Jcb.201411003  1
2015 Beck M. Randomized decryption (RD) mode of operation for homomorphic cryptography - Increasing encryption, communication and storage efficiency Proceedings - Ieee Infocom. 2015: 220-226. DOI: 10.1109/INFCOMW.2015.7179388  1
2015 von Appen A, Beck M. Structure Determination of the Nuclear Pore Complex with Three-Dimensional Cryo electron Microscopy Journal of Molecular Biology. DOI: 10.1016/j.jmb.2016.01.004  1
2015 Ori A, Toyama BH, Harris MS, Bock T, Iskar M, Bork P, Ingolia NT, Hetzer MW, Beck M. Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats Cell Systems. 1: 224-237. DOI: 10.1016/j.cels.2015.08.012  1
2014 Bock T, Chen WH, Ori A, Malik N, Silva-Martin N, Huerta-Cepas J, Powell ST, Kastritis PL, Smyshlyaev G, Vonkova I, Kirkpatrick J, Doerks T, Nesme L, Baßler J, Kos M, ... ... Beck M, et al. An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum. Nucleic Acids Research. 42: 13525-33. PMID 25398899 DOI: 10.1093/Nar/Gku1147  1
2014 Ori A, Andrés-Pons A, Beck M. The use of targeted proteomics to determine the stoichiometry of large macromolecular assemblies. Methods in Cell Biology. 122: 117-46. PMID 24857728 DOI: 10.1016/B978-0-12-417160-2.00006-0  0.4
2014 Piazza I, Rutkowska A, Ori A, Walczak M, Metz J, Pelechano V, Beck M, Haering CH. Association of condensin with chromosomes depends on DNA binding by its HEAT-repeat subunits. Nature Structural & Molecular Biology. 21: 560-8. PMID 24837193 DOI: 10.1038/Nsmb.2831  1
2014 Winkler J, Ori A, Holzer K, Sticht C, Dauch D, Eiteneuer EM, Pinna F, Geffers R, Ehemann V, Andres-Pons A, Breuhahn K, Longerich T, Bermejo JL, Gretz N, Zender L, ... ... Beck M, et al. Prosurvival function of the cellular apoptosis susceptibility/importin-α1 transport cycle is repressed by p53 in liver cancer. Hepatology (Baltimore, Md.). 60: 884-95. PMID 24799195 DOI: 10.1002/Hep.27207  1
2014 Beck M, Glavy JS. Toward understanding the structure of the vertebrate nuclear pore complex. Nucleus (Austin, Tex.). 5: 119-23. PMID 24699243 DOI: 10.4161/Nucl.28739  1
2013 Bui KH, von Appen A, DiGuilio AL, Ori A, Sparks L, Mackmull MT, Bock T, Hagen W, Andrés-Pons A, Glavy JS, Beck M. Integrated structural analysis of the human nuclear pore complex scaffold. Cell. 155: 1233-43. PMID 24315095 DOI: 10.1016/J.Cell.2013.10.055  1
2013 Thierbach K, Von Appen A, Thoms M, Beck M, Flemming D, Hurt E. Protein interfaces of the conserved Nup84 complex from chaetomium thermophilum shown by crosslinking mass spectrometry and electron microscopy Structure. 21: 1672-1682. PMID 23954503 DOI: 10.1016/J.Str.2013.07.004  1
2013 Ori A, Banterle N, Iskar M, Andrés-Pons A, Escher C, Khanh Bui H, Sparks L, Solis-Mezarino V, Rinner O, Bork P, Lemke EA, Beck M. Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines. Molecular Systems Biology. 9: 648. PMID 23511206 DOI: 10.1038/Msb.2013.4  1
2012 Herzog F, Kahraman A, Boehringer D, Mak R, Bracher A, Walzthoeni T, Leitner A, Beck M, Hartl FU, Ban N, Malmström L, Aebersold R. Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry. Science (New York, N.Y.). 337: 1348-52. PMID 22984071 DOI: 10.1126/Science.1221483  1
2012 Walzthoeni T, Claassen M, Leitner A, Herzog F, Bohn S, Förster F, Beck M, Aebersold R. False discovery rate estimation for cross-linked peptides identified by mass spectrometry. Nature Methods. 9: 901-3. PMID 22772729 DOI: 10.1038/Nmeth.2103  1
2011 Beck M, Schmidt A, Malmstroem J, Claassen M, Ori A, Szymborska A, Herzog F, Rinner O, Ellenberg J, Aebersold R. The quantitative proteome of a human cell line. Molecular Systems Biology. 7: 549. PMID 22068332 DOI: 10.1038/Msb.2011.82  1
2011 Schmidt A, Beck M, Malmström J, Lam H, Claassen M, Campbell D, Aebersold R. Absolute quantification of microbial proteomes at different states by directed mass spectrometry. Molecular Systems Biology. 7: 510. PMID 21772258 DOI: 10.1038/Msb.2011.37  0.52
2011 Reiter L, Rinner O, Picotti P, Hüttenhain R, Beck M, Brusniak MY, Hengartner MO, Aebersold R. mProphet: automated data processing and statistical validation for large-scale SRM experiments. Nature Methods. 8: 430-5. PMID 21423193 DOI: 10.1038/Nmeth.1584  0.52
2011 Beck M, Claassen M, Aebersold R. Comprehensive proteomics. Current Opinion in Biotechnology. 22: 3-8. PMID 20888217 DOI: 10.1016/j.copbio.2010.09.002  0.52
2010 Bohn S, Beck F, Sakata E, Walzthoeni T, Beck M, Aebersold R, Förster F, Baumeister W, Nickell S. Structure of the 26S proteasome from Schizosaccharomyces pombe at subnanometer resolution. Proceedings of the National Academy of Sciences of the United States of America. 107: 20992-7. PMID 21098295 DOI: 10.1073/Pnas.1015530107  1
2010 Förster F, Han BG, Beck M. Visual proteomics. Methods in Enzymology. 483: 215-43. PMID 20888477 DOI: 10.1016/S0076-6879(10)83011-3  1
2010 Leitner A, Walzthoeni T, Kahraman A, Herzog F, Rinner O, Beck M, Aebersold R. Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics. Molecular & Cellular Proteomics : McP. 9: 1634-49. PMID 20360032 DOI: 10.1074/Mcp.R000001-Mcp201  0.52
2009 Beck M, Malmström JA, Lange V, Schmidt A, Deutsch EW, Aebersold R. Visual proteomics of the human pathogen Leptospira interrogans. Nature Methods. 6: 817-23. PMID 19838170 DOI: 10.1038/Nmeth.1390  1
2009 Malmström J, Beck M, Schmidt A, Lange V, Deutsch EW, Aebersold R. Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans. Nature. 460: 762-5. PMID 19606093 DOI: 10.1038/Nature08184  1
2009 Medalia N, Beer A, Zwickl P, Mihalache O, Beck M, Medalia O, Navon A. Architecture and molecular mechanism of PAN, the archaeal proteasome regulatory ATPase. The Journal of Biological Chemistry. 284: 22952-60. PMID 19363223 DOI: 10.1074/Jbc.M809643200  1
2008 Beck M, Medalia O. Structural and functional insights into nucleocytoplasmic transport. Histology and Histopathology. 23: 1025-33. PMID 18498078 DOI: 10.14670/Hh-23.1025  1
2008 Rinner O, Seebacher J, Walzthoeni T, Mueller LN, Beck M, Schmidt A, Mueller M, Aebersold R. Identification of cross-linked peptides from large sequence databases. Nature Methods. 5: 315-8. PMID 18327264 DOI: 10.1038/Nmeth.1192  0.52
2007 Beck M, Lucić V, Förster F, Baumeister W, Medalia O. Snapshots of nuclear pore complexes in action captured by cryo-electron tomography. Nature. 449: 611-5. PMID 17851530 DOI: 10.1038/Nature06170  1
2007 Medalia O, Beck M, Ecke M, Weber I, Neujahr R, Baumeister W, Gerisch G. Organization of actin networks in intact filopodia. Current Biology : Cb. 17: 79-84. PMID 17208190 DOI: 10.1016/J.Cub.2006.11.022  1
2006 Garvalov BK, Zuber B, Bouchet-Marquis C, Kudryashev M, Gruska M, Beck M, Leis A, Frischknecht F, Bradke F, Baumeister W, Dubochet J, Cyrklaff M. Luminal particles within cellular microtubules. The Journal of Cell Biology. 174: 759-65. PMID 16954350 DOI: 10.1083/Jcb.200606074  0.36
2004 Beck M, Förster F, Ecke M, Plitzko JM, Melchior F, Gerisch G, Baumeister W, Medalia O. Nuclear pore complex structure and dynamics revealed by cryoelectron tomography. Science (New York, N.Y.). 306: 1387-90. PMID 15514115 DOI: 10.1126/Science.1104808  1
2004 Baumeister W, Beck M, Briegel A, Cyrklaff M, Keil T, Kürner J, Lucic V, Medalia O, Nickell S, Plitzko J. Exploring the inner space of cells by cryoelectron-tomography Microscopy and Microanalysis. 10: 152-153. DOI: 10.1017/S1431927604880218  1
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