| Year |
Citation |
Score |
| 2023 |
Cho A, Ahn J, Kim A, Lee JH, Ryu HS, Kim KM, Yi EC. Proteomics analysis of an individual formalin-fixed paraffin-embedded tissue section using isobaric-tag amplification. Rapid Communications in Mass Spectrometry : Rcm. 37: e9616. PMID 37817342 DOI: 10.1002/rcm.9616 |
0.316 |
|
| 2019 |
Lee HY, Kim EG, Jung HR, Jung JW, Kim HB, Cho JW, Kim KM, Yi EC. Refinements of LC-MS/MS Spectral Counting Statistics Improve Quantification of Low Abundance Proteins. Scientific Reports. 9: 13653. PMID 31541118 DOI: 10.1038/s41598-019-49665-1 |
0.379 |
|
| 2019 |
Shin J, Kwon Y, Lee S, Na S, Hong EY, Ju S, Jung HG, Kaushal P, Shin S, Back JH, Choi SY, Kim EH, Lee SJ, Park YE, Ahn HS, ... ... Yi EC, et al. Common Repository of FBS Proteins (cRFP) to be added to a search database for mass spectrometric analysis of cell secretome. Journal of Proteome Research. PMID 31475827 DOI: 10.1021/acs.jproteome.9b00475 |
0.41 |
|
| 2012 |
Kim KM, Yi EC, Kim Y. Mapping protein receptor-ligand interactions via in vivo chemical crosslinking, affinity purification, and differential mass spectrometry. Methods (San Diego, Calif.). 56: 161-5. PMID 22062956 DOI: 10.1016/j.ymeth.2011.10.013 |
0.305 |
|
| 2008 |
Kennedy J, Yi EC. Use of gas-phase fractionation to increase protein identifications : application to the peroxisome. Methods in Molecular Biology (Clifton, N.J.). 432: 217-28. PMID 18370021 DOI: 10.1007/978-1-59745-028-7_15 |
0.398 |
|
| 2007 |
Goodlett DR, Yi EC, Mottay P. Preparation and Use of an Integrated Microcapillary HPLC Column and ESI Device for Proteomic Analysis. Csh Protocols. 2007: pdb.prot4617. PMID 21357072 DOI: 10.1101/Pdb.Prot4617 |
0.488 |
|
| 2007 |
Chiang MC, Juo CG, Chang HH, Chen HM, Yi EC, Chern Y. Systematic uncovering of multiple pathways underlying the pathology of Huntington disease by an acid-cleavable isotope-coded affinity tag approach. Molecular & Cellular Proteomics : McP. 6: 781-97. PMID 17272267 DOI: 10.1074/Mcp.M600356-Mcp200 |
0.391 |
|
| 2007 |
Wang P, Tang H, Fitzgibbon MP, McIntosh M, Coram M, Zhang H, Yi E, Aebersold R. A statistical method for chromatographic alignment of LC-MS data. Biostatistics (Oxford, England). 8: 357-67. PMID 16880200 DOI: 10.1093/Biostatistics/Kxl015 |
0.419 |
|
| 2006 |
Zhang H, Loriaux P, Eng J, Campbell D, Keller A, Moss P, Bonneau R, Zhang N, Zhou Y, Wollscheid B, Cooke K, Yi EC, Lee H, Peskind ER, Zhang J, et al. UniPep--a database for human N-linked glycosites: a resource for biomarker discovery. Genome Biology. 7: R73. PMID 16901351 DOI: 10.1186/Gb-2006-7-8-R73 |
0.316 |
|
| 2006 |
Chen R, Pan S, Yi EC, Donohoe S, Bronner MP, Potter JD, Goodlett DR, Aebersold R, Brentnall TA. Quantitative proteomic profiling of pancreatic cancer juice. Proteomics. 6: 3871-9. PMID 16739137 DOI: 10.1002/Pmic.200500702 |
0.543 |
|
| 2006 |
Gan RR, Yi EC, Chiu Y, Lee H, Kao YC, Wu TH, Aebersold R, Goodlett DR, Ng WV. Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter. Molecular & Cellular Proteomics : McP. 5: 987-97. PMID 16497792 DOI: 10.1074/Mcp.M500367-Mcp200 |
0.521 |
|
| 2005 |
Chen SS, Deutsch EW, Yi EC, Li XJ, Goodlett DR, Aebersold R. Improving mass and liquid chromatography based identification of proteins using bayesian scoring. Journal of Proteome Research. 4: 2174-84. PMID 16335964 DOI: 10.1021/Pr050251C |
0.531 |
|
| 2005 |
Chen R, Yi EC, Donohoe S, Pan S, Eng J, Cooke K, Crispin DA, Lane Z, Goodlett DR, Bronner MP, Aebersold R, Brentnall TA. Pancreatic cancer proteome: the proteins that underlie invasion, metastasis, and immunologic escape. Gastroenterology. 129: 1187-97. PMID 16230073 DOI: 10.1053/J.Gastro.2005.08.001 |
0.444 |
|
| 2005 |
Li XJ, Yi EC, Kemp CJ, Zhang H, Aebersold R. A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry. Molecular & Cellular Proteomics : McP. 4: 1328-40. PMID 16048906 DOI: 10.1074/Mcp.M500141-Mcp200 |
0.329 |
|
| 2005 |
Welch KD, Wen B, Goodlett DR, Yi EC, Lee H, Reilly TP, Nelson SD, Pohl LR. Proteomic identification of potential susceptibility factors in drug-induced liver disease. Chemical Research in Toxicology. 18: 924-33. PMID 15962927 DOI: 10.1021/Tx050011B |
0.485 |
|
| 2005 |
Zhang J, Goodlett DR, Quinn JF, Peskind E, Kaye JA, Zhou Y, Pan C, Yi E, Eng J, Wang Q, Aebersold RH, Montine TJ. Quantitative proteomics of cerebrospinal fluid from patients with Alzheimer disease. Journal of Alzheimer's Disease : Jad. 7: 125-33; discussion 1. PMID 15851850 DOI: 10.3233/Jad-2005-7205 |
0.566 |
|
| 2005 |
Lin B, White JT, Lu W, Xie T, Utleg AG, Yan X, Yi EC, Shannon P, Khrebtukova I, Lange PH, Goodlett DR, Zhou D, Vasicek TJ, Hood L. Evidence for the presence of disease-perturbed networks in prostate cancer cells by genomic and proteomic analyses: a systems approach to disease. Cancer Research. 65: 3081-91. PMID 15833837 DOI: 10.1158/0008-5472.Can-04-3218 |
0.484 |
|
| 2005 |
Yi EC, Li XJ, Cooke K, Lee H, Raught B, Page A, Aneliunas V, Hieter P, Goodlett DR, Aebersold R. Increased quantitative proteome coverage with (13)C/(12)C-based, acid-cleavable isotope-coded affinity tag reagent and modified data acquisition scheme. Proteomics. 5: 380-7. PMID 15648049 DOI: 10.1002/Pmic.200400970 |
0.583 |
|
| 2005 |
Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S, Fausto N, Hafen E, Hood L, Katze MG, Kennedy KA, ... ... Yi EC, et al. Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry. Genome Biology. 6: R9. PMID 15642101 DOI: 10.1186/Gb-2004-6-1-R9 |
0.458 |
|
| 2005 |
Zhang H, Yi EC, Li XJ, Mallick P, Kelly-Spratt KS, Masselon CD, Camp DG, Smith RD, Kemp CJ, Aebersold R. High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry. Molecular & Cellular Proteomics : McP. 4: 144-55. PMID 15608340 DOI: 10.1074/Mcp.M400090-Mcp200 |
0.492 |
|
| 2005 |
Zhang J, Goodlett DR, Peskind ER, Quinn JF, Zhou Y, Wang Q, Pan C, Yi E, Eng J, Aebersold RH, Montine TJ. Quantitative proteomic analysis of age-related changes in human cerebrospinal fluid. Neurobiology of Aging. 26: 207-27. PMID 15582749 DOI: 10.1016/J.Neurobiolaging.2004.03.012 |
0.6 |
|
| 2004 |
Yi EC, Goodlett DR. Quantitative protein profile comparisons using the isotope-coded affinity tag method. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 23.2. PMID 18429263 DOI: 10.1002/0471140864.ps2302s34 |
0.613 |
|
| 2004 |
Marelli M, Smith JJ, Jung S, Yi E, Nesvizhskii AI, Christmas RH, Saleem RA, Tam YY, Fagarasanu A, Goodlett DR, Aebersold R, Rachubinski RA, Aitchison JD. Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane. The Journal of Cell Biology. 167: 1099-112. PMID 15596542 DOI: 10.1083/Jcb.200404119 |
0.748 |
|
| 2004 |
Wollscheid B, von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. Lipid raft proteins and their identification in T lymphocytes. Sub-Cellular Biochemistry. 37: 121-52. PMID 15376619 DOI: 10.1007/978-1-4757-5806-1_3 |
0.62 |
|
| 2004 |
Yan W, Lee H, Yi EC, Reiss D, Shannon P, Kwieciszewski BK, Coito C, Li XJ, Keller A, Eng J, Galitski T, Goodlett DR, Aebersold R, Katze MG. System-based proteomic analysis of the interferon response in human liver cells. Genome Biology. 5: R54. PMID 15287976 DOI: 10.1186/Gb-2004-5-8-R54 |
0.534 |
|
| 2004 |
Tian Q, Stepaniants SB, Mao M, Weng L, Feetham MC, Doyle MJ, Yi EC, Dai H, Thorsson V, Eng J, Goodlett D, Berger JP, Gunter B, Linseley PS, Stoughton RB, et al. Integrated genomic and proteomic analyses of gene expression in Mammalian cells. Molecular & Cellular Proteomics : McP. 3: 960-9. PMID 15238602 DOI: 10.1074/Mcp.M400055-Mcp200 |
0.304 |
|
| 2004 |
Lee H, Yi EC, Wen B, Reily TP, Pohl L, Nelson S, Aebersold R, Goodlett DR. Optimization of reversed-phase microcapillary liquid chromatography for quantitative proteomics. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 803: 101-10. PMID 15026003 DOI: 10.1016/J.Jchromb.2003.09.005 |
0.59 |
|
| 2004 |
Martin DB, Gifford DR, Wright ME, Keller A, Yi E, Goodlett DR, Aebersold R, Nelson PS. Quantitative proteomic analysis of proteins released by neoplastic prostate epithelium. Cancer Research. 64: 347-55. PMID 14729644 DOI: 10.1158/0008-5472.Can-03-2062 |
0.575 |
|
| 2004 |
Aebersold R, Li X, Yi E, Mallick P, Zhang H. 5 Towards a high throughput platform for quantitative serum protein profiling European Journal of Cancer Supplements. 2: 3. DOI: 10.1016/S1359-6349(04)80014-4 |
0.304 |
|
| 2004 |
Goo YA, Yi E, Sorensen CM, Hood LE, Liu AY. 1329: Identification of Candidate Stromal Mesenchyme Cell Genes Associated With the Organ-Specific Differentiation of Epithelial Journal of Urology. 171: 350-350. DOI: 10.1016/S0022-5347(18)38554-9 |
0.59 |
|
| 2003 |
Fejes AP, Yi EC, Goodlett DR, Beatty JT. Shotgun proteomic analysis of a chromatophore-enriched preparation from the purple phototrophic bacterium Rhodopseudomonas palustris. Photosynthesis Research. 78: 195-203. PMID 16245051 DOI: 10.1023/B:Pres.0000006752.81486.74 |
0.629 |
|
| 2003 |
Yi EC, Lee H, Aebersold R, Goodlett DR. A microcapillary trap cartridge-microcapillary high-performance liquid chromatography electrospray ionization emitter device capable of peptide tandem mass spectrometry at the attomole level on an ion trap mass spectrometer with automated routine operation. Rapid Communications in Mass Spectrometry : Rcm. 17: 2093-8. PMID 12955739 DOI: 10.1002/Rcm.1150 |
0.547 |
|
| 2003 |
Goo YA, Yi EC, Baliga NS, Tao WA, Pan M, Aebersold R, Goodlett DR, Hood L, Ng WV. Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. Molecular & Cellular Proteomics : McP. 2: 506-24. PMID 12872007 DOI: 10.1074/Mcp.M300044-Mcp200 |
0.747 |
|
| 2003 |
Kolker E, Purvine S, Galperin MY, Stolyar S, Goodlett DR, Nesvizhskii AI, Keller A, Xie T, Eng JK, Yi E, Hood L, Picone AF, Cherny T, Tjaden BC, Siegel AF, et al. Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20. Journal of Bacteriology. 185: 4593-602. PMID 12867470 DOI: 10.1128/Jb.185.15.4593-4602.2003 |
0.661 |
|
| 2003 |
Guina T, Wu M, Miller SI, Purvine SO, Yi EC, Eng J, Goodlett DR, Aebersold R, Ernst RK, Lee KA. Proteomic analysis of Pseudomonas aeruginosa grown under magnesium limitation. Journal of the American Society For Mass Spectrometry. 14: 742-51. PMID 12837596 DOI: 10.1016/S1044-0305(03)00133-8 |
0.772 |
|
| 2003 |
Shiio Y, Eisenman RN, Yi EC, Donohoe S, Goodlett DR, Aebersold R. Quantitative proteomic analysis of chromatin-associated factors. Journal of the American Society For Mass Spectrometry. 14: 696-703. PMID 12837591 DOI: 10.1016/S1044-0305(03)00204-6 |
0.537 |
|
| 2003 |
Purvine S, Eppel JT, Yi EC, Goodlett DR. Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer. Proteomics. 3: 847-50. PMID 12833507 DOI: 10.1002/Pmic.200300362 |
0.501 |
|
| 2003 |
von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation. Molecular & Cellular Proteomics : McP. 2: 428-42. PMID 12832459 DOI: 10.1074/Mcp.M300041-Mcp200 |
0.67 |
|
| 2003 |
von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT and tandem mass spectrometry to proteins copurifying with T cell lipid rafts. Molecular & Cellular Proteomics : McP. 2: 426-7. PMID 12832456 DOI: 10.1074/Mcp.D300002-Mcp200 |
0.643 |
|
| 2003 |
Utleg AG, Yi EC, Xie T, Shannon P, White JT, Goodlett DR, Hood L, Lin B. Proteomic analysis of human prostasomes. The Prostate. 56: 150-61. PMID 12746840 DOI: 10.1002/Pros.10255 |
0.472 |
|
| 2003 |
Sydorskyy Y, Dilworth DJ, Yi EC, Goodlett DR, Wozniak RW, Aitchison JD. Intersection of the Kap123p-mediated nuclear import and ribosome export pathways Molecular and Cellular Biology. 23: 2042-2054. PMID 12612077 DOI: 10.1128/MCB.23.6.2042-2054.2003 |
0.488 |
|
| 2003 |
Guina T, Purvine SO, Yi EC, Eng J, Goodlett DR, Aebersold R, Miller SI. Quantitative proteomic analysis indicates increased synthesis of a quinolone by Pseudomonas aeruginosa isolates from cystic fibrosis airways. Proceedings of the National Academy of Sciences of the United States of America. 100: 2771-6. PMID 12601166 DOI: 10.1073/Pnas.0435846100 |
0.467 |
|
| 2003 |
Ranish JA, Yi EC, Leslie DM, Purvine SO, Goodlett DR, Eng J, Aebersold R. The study of macromolecular complexes by quantitative proteomics. Nature Genetics. 33: 349-55. PMID 12590263 DOI: 10.1038/Ng1101 |
0.562 |
|
| 2003 |
Goodlett DR, Yi EC. Stable isotopic labeling and mass spectrometry as a means to determine differences in protein expression Trac - Trends in Analytical Chemistry. 22: 282-290. DOI: 10.1016/S0165-9936(03)00505-3 |
0.577 |
|
| 2002 |
Baliga NS, Pan M, Goo YA, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L. Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proceedings of the National Academy of Sciences of the United States of America. 99: 14913-8. PMID 12403819 DOI: 10.1073/Pnas.192558999 |
0.651 |
|
| 2002 |
Shiio Y, Donohoe S, Yi EC, Goodlett DR, Aebersold R, Eisenman RN. Quantitative proteomic analysis of Myc oncoprotein function. The Embo Journal. 21: 5088-96. PMID 12356725 DOI: 10.1093/Emboj/Cdf525 |
0.581 |
|
| 2002 |
Yi EC, Marelli M, Lee H, Purvine SO, Aebersold R, Aitchison JD, Goodlett DR. Approaching complete peroxisome characterization by gas-phase fractionation. Electrophoresis. 23: 3205-16. PMID 12298092 DOI: 10.1002/1522-2683(200209)23:18<3205::Aid-Elps3205>3.0.Co;2-Y |
0.564 |
|
| 2002 |
Goodlett DR, Yi EC. Proteomics without polyacrylamide: qualitative and quantitative uses of tandem mass spectrometry in proteome analysis. Functional & Integrative Genomics. 2: 138-53. PMID 12192588 DOI: 10.1007/s10142-001-0041-3 |
0.612 |
|
| 2001 |
Goodlett DR, Keller A, Watts JD, Newitt R, Yi EC, Purvine S, Eng JK, von Haller P, Aebersold R, Kolker E. Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation. Rapid Communications in Mass Spectrometry : Rcm. 15: 1214-21. PMID 11445905 DOI: 10.1002/Rcm.362 |
0.529 |
|
| 2001 |
Hayashi F, Smith KD, Ozinsky A, Hawn TR, Yi EC, Goodlett DR, Eng JK, Akira S, Underhill DM, Aderem A. The innate immune response to bacterial flagellin is mediated by Toll-like receptor 5. Nature. 410: 1099-103. PMID 11323673 DOI: 10.1038/35074106 |
0.422 |
|
| Show low-probability matches. |