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Derrick Wood - Publications

Affiliations: 
2014 Computer Science University of Maryland, College Park, College Park, MD 
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9 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Lu J, Rincon N, Wood DE, Breitwieser FP, Pockrandt C, Langmead B, Salzberg SL, Steinegger M. Metagenome analysis using the Kraken software suite. Nature Protocols. PMID 36171387 DOI: 10.1038/s41596-022-00738-y  0.524
2022 Keefer LA, White JR, Wood DE, Gerding KMR, Valkenburg KC, Riley D, Gault C, Papp E, Vollmer CM, Greer A, Hernandez J, McGregor PM, Zingone A, Ryan BM, Deak K, et al. Automated next-generation profiling of genomic alterations in human cancers. Nature Communications. 13: 2830. PMID 35595835 DOI: 10.1038/s41467-022-30380-x  0.654
2021 Salzberg SL, Wood DE. Releasing the Kraken. Frontiers in Bioinformatics. 1: 808003. PMID 36303747 DOI: 10.3389/fbinf.2021.808003  0.523
2019 Wood DE, Lu J, Langmead B. Improved metagenomic analysis with Kraken 2. Genome Biology. 20: 257. PMID 31779668 DOI: 10.1186/S13059-019-1891-0  0.622
2018 Wood DE, White JR, Georgiadis A, Van Emburgh B, Parpart-Li S, Mitchell J, Anagnostou V, Niknafs N, Karchin R, Papp E, McCord C, LoVerso P, Riley D, Diaz LA, Jones S, et al. A machine learning approach for somatic mutation discovery. Science Translational Medicine. 10. PMID 30185652 DOI: 10.1126/Scitranslmed.Aar7939  0.596
2014 Merchant S, Wood DE, Salzberg SL. Unexpected cross-species contamination in genome sequencing projects. Peerj. 2: e675. PMID 25426337 DOI: 10.7717/peerj.675  0.631
2014 Wood DE, Salzberg SL. Kraken: ultrafast metagenomic sequence classification using exact alignments. Genome Biology. 15: R46. PMID 24580807 DOI: 10.1186/gb-2014-15-3-r46  0.53
2013 Magoc T, Wood D, Salzberg SL. EDGE-pro: Estimated Degree of Gene Expression in Prokaryotic Genomes. Evolutionary Bioinformatics Online. 9: 127-36. PMID 23531787 DOI: 10.4137/Ebo.S11250  0.654
2012 Wood DE, Lin H, Levy-Moonshine A, Swaminathan R, Chang YC, Anton BP, Osmani L, Steffen M, Kasif S, Salzberg SL. Thousands of missed genes found in bacterial genomes and their analysis with COMBREX. Biology Direct. 7: 37. PMID 23111013 DOI: 10.1186/1745-6150-7-37  0.61
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