Rashmi Pant - Related publications

2004 California Institute of Technology, Pasadena, CA 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Tan Y, Wang C, Schneider T, Li H, de Souza RF, Tang X, Swisher Grimm KD, Hsieh TF, Wang X, Li X, Zhang D. Comparative Phylogenomic Analysis Reveals Evolutionary Genomic Changes and Novel Toxin Families in Endophytic Pathogens. Microbiology Spectrum. e0050921. PMID 34523996 DOI: 10.1128/Spectrum.00509-21   
2021 Safder I, Shao G, Sheng Z, Hu P, Tang S. Genome-wide identification studies - A primer to explore new genes in plant species. Plant Biology (Stuttgart, Germany). PMID 34558163 DOI: 10.1111/plb.13340   
2021 Huang CH, Chen CC, Lin YC, Chen CH, Lee AY, Liou JS, Gu CT, Huang L. The Gene as a Genome-Wide Taxonomic Marker for High Resolution Discrimination of and Its Closely Related Taxa. Microorganisms. 9. PMID 34442649 DOI: 10.3390/microorganisms9081570   
2021 Huang Y, Sun M, Zhuang L, He J. Molecular Phylogenetic Analysis of the Family in Vertebrates. Genes. 12. PMID 34440364 DOI: 10.3390/genes12081190   
2021 Hao Z, Li Y, Jiang Y, Xu J, Li J, Luo L. Genome Sequence Analysis of the Fungal Pathogen Using Oxford Nanopore Technology. Journal of Fungi (Basel, Switzerland). 7. PMID 34575738 DOI: 10.3390/jof7090699   
2021 Shan Y, Pei X, Yong S, Li J, Qin Q, Zeng S, Yu J. Analysis of the complete chloroplast genomes of and (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 2672-2680. PMID 34435116 DOI: 10.1080/23802359.2021.1920491   
2021 Heckel DG. Perspectives on gene copy number variation and pesticide resistance. Pest Management Science. PMID 34480789 DOI: 10.1002/ps.6631   
2021 Shi L, Wang K, Du L, Song Y, Li H, Ye X. Genome-Wide Identification and Expression Profiling Analysis of WOX Family Protein-Encoded Genes in Triticeae Species. International Journal of Molecular Sciences. 22. PMID 34502234 DOI: 10.3390/ijms22179325   
2021 Liu N, Low WY, Alinejad-Rokny H, Pederson S, Sadlon T, Barry S, Breen J. Seeing the forest through the trees: prioritising potentially functional interactions from Hi-C. Epigenetics & Chromatin. 14: 41. PMID 34454581 DOI: 10.1186/s13072-021-00417-4   
2021 Yuan XL, Zhang CS, Kong FY, Zhang ZF, Wang FL. Genome Analysis of JM01 Provides Insights into Its Pathogenicity Mechanisms. Plants (Basel, Switzerland). 10. PMID 34451665 DOI: 10.3390/plants10081620   
2021 Takeda I, Araki M, Ishiguro KI, Ohga T, Takada K, Yamaguchi Y, Hashimoto K, Kai T, Nakagata N, Imasaka M, Yoshinobu K, Araki K. Gene trapping reveals a new transcriptionally active genome element: The chromosome-specific clustered trap region. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 34418226 DOI: 10.1111/gtc.12890   
2021 Awan F, Ali MM, Hamid M, Awan MH, Mushtaq MH, Kalsoom S, Ijaz M, Mehmood K, Liu Y. Epi-Gene: An R-Package for Easy Pan-Genome Analysis. Biomed Research International. 2021: 5585586. PMID 34595238 DOI: 10.1155/2021/5585586   
2021 Avsec Ž, Agarwal V, Visentin D, Ledsam JR, Grabska-Barwinska A, Taylor KR, Assael Y, Jumper J, Kohli P, Kelley DR. Effective gene expression prediction from sequence by integrating long-range interactions. Nature Methods. 18: 1196-1203. PMID 34608324 DOI: 10.1038/s41592-021-01252-x   
2021 Ross K, Varani AM, Snesrud E, Huang H, Alvarenga DO, Zhang J, Wu C, McGann P, Chandler M. TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis. Mbio. e0206021. PMID 34517763 DOI: 10.1128/mBio.02060-21   
2021 Agarwal G, Choudhary D, Stice SP, Myers BK, Gitaitis RD, Venter SN, Kvitko BH, Dutta B. Pan-Genome-Wide Analysis of Identified Genes Linked to Pathogenicity in Onion. Frontiers in Microbiology. 12: 684756. PMID 34489883 DOI: 10.3389/fmicb.2021.684756   
2021 Rueda-Mejia MP, Nägeli L, Lutz S, Hayes RD, Varadarajan AR, Grigoriev IV, Ahrens CH, Freimoser FM. Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus to identify potential biocontrol genes. Microbial Cell (Graz, Austria). 8: 184-202. PMID 34395586 DOI: 10.15698/mic2021.08.757   
2021 Han L, Lan T, Li D, Li H, Deng L, Peng Z, He S, Zhou Y, Han R, Li L, Lu Y, Lu H, Wang Q, Yang S, Zhu Y, et al. Chromosome-scale assembly and whole-genome sequencing of 266 giant panda roundworms provide insights into their evolution, adaptation and potential drug targets. Molecular Ecology Resources. PMID 34549895 DOI: 10.1111/1755-0998.13504   
2021 Mohammadi M, Smith EA, Stanghellini ME, Kaundal R. Insights into the Host Specificity of a New Oomycete Root Pathogen, P1: Whole Genome Sequencing and Comparative Analysis Reveals Contracted Regulation of Metabolism, Protein Families, and Distinct Pathogenicity Repertoire. International Journal of Molecular Sciences. 22. PMID 34445718 DOI: 10.3390/ijms22169002   
2021 Hodor P, Pope CE, Whitlock KB, Hoffman LR, Limbrick DL, McDonald PJ, Hauptman JS, Ojemann JG, Simon TD. Molecular Characterization of Microbiota in Cerebrospinal Fluid From Patients With CSF Shunt Infections Using Whole Genome Amplification Followed by Shotgun Sequencing. Frontiers in Cellular and Infection Microbiology. 11: 699506. PMID 34490140 DOI: 10.3389/fcimb.2021.699506   
2021 Ghemrawi M, Fischinger F, Duncan G, Dukes MJ, Guilliano M, McCord B. Developmental validation of SpeID: A pyrosequencing-based assay for species identification. Forensic Science International. Genetics. 55: 102560. PMID 34507077 DOI: 10.1016/j.fsigen.2021.102560   
2021 Qin X, Wang H, Miao C, Yang X, Zhang Y, Feng J, Forsythe SJ, Man C, Jiang Y. Comparative genomics reveals environmental adaptation differences between Cronobacter species. Food Research International (Ottawa, Ont.). 147: 110541. PMID 34399518 DOI: 10.1016/j.foodres.2021.110541   
2021 Kesawat MS, Kherawat BS, Singh A, Dey P, Kabi M, Debnath D, Saha D, Khandual A, Rout S, Manorama, Ali A, Palem RR, Gupta R, Kadam AA, Kim HU, et al. Genome-Wide Identification and Characterization of the Brassinazole-resistant () Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat ( L.). International Journal of Molecular Sciences. 22. PMID 34445448 DOI: 10.3390/ijms22168743   
2021 Schmitz RJ, Marand AP, Zhang X, Mosher RA, Turck F, Chen X, Axtell MJ, Zhong X, Brady SM, Megraw M, Meyers BC. Quality control and evaluation of plant epigenomics data. The Plant Cell. PMID 34648025 DOI: 10.1093/plcell/koab255   
2021 Lupande-Mwenebitu D, Khedher MB, Khabthani S, Rym L, Phoba MF, Nabti LZ, Lunguya-Metila O, Pantel A, Lavigne JP, Rolain JM, Diene SM. First Genome Description of Isolate Bearing NDM-1 from Blood Culture. Microorganisms. 9. PMID 34442831 DOI: 10.3390/microorganisms9081751   
2021 Zhou J, Du Q, Jiang M, Liu S, Wang L, Chen H, Wang B, Liu C. Characterization and comparative analysis of the plastome sequence from (Lamiales: Acanthaceae). Mitochondrial Dna. Part B, Resources. 6: 2896-2902. PMID 34604529 DOI: 10.1080/23802359.2021.1922099   
2021 Tu JL, Bai XY, Xu YL, Li N, Xu JW. Targeted gene insertion and replacement in the basidiomycete by inactivation of non-homologous end joining using CRISPR/Cas9. Applied and Environmental Microbiology. AEM0151021. PMID 34524900 DOI: 10.1128/AEM.01510-21   
2021 Guerrini MM, Oguchi A, Suzuki A, Murakawa Y. Cap analysis of gene expression (CAGE) and noncoding regulatory elements. Seminars in Immunopathology. PMID 34468849 DOI: 10.1007/s00281-021-00886-5   
2021 Lee JH, Siddique MI, Kwon JK, Kang BC. Comparative Genomic Analysis Reveals Genetic Variation and Adaptive Evolution in the Pathogenicity-Related Genes of . Frontiers in Microbiology. 12: 694136. PMID 34484141 DOI: 10.3389/fmicb.2021.694136   
2021 Ma X, Yan H, Yang J, Liu Y, Li Z, Sheng M, Cao Y, Yu X, Yi X, Xu W, Su Z. PlantGSAD: a comprehensive gene set annotation database for plant species. Nucleic Acids Research. PMID 34534340 DOI: 10.1093/nar/gkab794   
2021 Jiang T, Yin Z, Cai R, Yu H, Lu Q, Zhao S, Tian Y, Yan Y, Chen X, Guo J. Chromosomal-level Genome Assembly of a True Bug, Aspongopus chinensis Dallas, 1851 (Hemiptera: Dinidoridae). Genome Biology and Evolution. PMID 34623414 DOI: 10.1093/gbe/evab232   
2021 Zhang L, Wang S, Su C, Harris AJ, Zhao L, Su N, Wang JR, Duan L, Chang ZY. Comparative Chloroplast Genomics and Phylogenetic Analysis of (Zygophyllaceae) of China. Frontiers in Plant Science. 12: 723622. PMID 34630471 DOI: 10.3389/fpls.2021.723622   
2021 Lv W, Li T, Wang S, Wang H, Li X, Zhang S, Wang L, Xu Y, Wei W. The Application of the CRISPR/Cas9 System in the Treatment of Hepatitis B Liver Cancer. Technology in Cancer Research & Treatment. 20: 15330338211045206. PMID 34605326 DOI: 10.1177/15330338211045206   
2021 Ding Y, Zhu J, Zhao D, Liu Q, Yang Q, Zhang T. Targeting -Regulatory Elements for Rice Grain Quality Improvement. Frontiers in Plant Science. 12: 705834. PMID 34456947 DOI: 10.3389/fpls.2021.705834   
2021 James SA, Ong HS, Hari R, Khan AM. A systematic bioinformatics approach for large-scale identification and characterization of host-pathogen shared sequences. Bmc Genomics. 22: 700. PMID 34583643 DOI: 10.1186/s12864-021-07657-4   
2021 Ehmsen KT, Knuesel MT, Martinez D, Asahina M, Aridomi H, Yamamoto KR. Computational resources to define alleles and altered regulatory motifs at genomically edited candidate response elements. Nucleic Acids Research. PMID 34417596 DOI: 10.1093/nar/gkab700   
2021 Wu CF, Weisberg AJ, Davis EW, Chou L, Khan S, Lai EM, Kuo CH, Chang JH. Diversification of the Type VI Secretion System in Agrobacteria. Mbio. e0192721. PMID 34517758 DOI: 10.1128/mBio.01927-21   
2021 Groves IJ, Drane ELA, Michalski M, Monahan JM, Scarpini CG, Smith SP, Bussotti G, Várnai C, Schoenfelder S, Fraser P, Enright AJ, Coleman N. Short- and long-range cis interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis. Plos Pathogens. 17: e1009875. PMID 34432858 DOI: 10.1371/journal.ppat.1009875   
2021 Zhou P, Wang L, Liu H, Li C, Li Z, Wang J, Tan X. CyanoOmicsDB: an integrated omics database for functional genomic analysis of cyanobacteria. Nucleic Acids Research. PMID 34614159 DOI: 10.1093/nar/gkab891   
2021 Wang Y, Fang G, Chen X, Cao Y, Wu N, Cui Q, Zhu C, Qian L, Huang Y, Zhan S. The genome of the black cutworm Agrotis ipsilon. Insect Biochemistry and Molecular Biology. 103665. PMID 34624466 DOI: 10.1016/j.ibmb.2021.103665   
2021 Jiang N, Hu S, Peng B, Li Z, Yuan X, Xiao S, Fu Y. Genome of Species Provides Insights Into the Evolution, Conifers Substrate Utilization, and Terpene Synthesis for . Frontiers in Microbiology. 12: 724451. PMID 34603250 DOI: 10.3389/fmicb.2021.724451   
2021 Frenk S, Rakovitsky N, Kon H, Rov R, Abramov S, Lurie-Weinberger MN, Schwartz D, Pinco E, Lellouche J, Carmeli Y. OXA-900, a Novel OXA Sub-Family Carbapenemase Identified in , Evades Detection by Commercial Molecular Diagnostics Tests. Microorganisms. 9. PMID 34576793 DOI: 10.3390/microorganisms9091898   
2021 Hallur V, Prakash H, Sable M, Preetam C, Purushotham P, Senapati R, Shankarnarayan SA, Bag ND, Rudramurthy SM. a New Species of from India Causing Disease in an Immunocompetent Individual. Journal of Fungi (Basel, Switzerland). 7. PMID 34436209 DOI: 10.3390/jof7080670   
2021 Song YF, Ye Q, Li M, Chen J, Yi XG, Wang XR, Wang SJ. The complete plastid genome of cherry plants (Rosaceae) and its phylogenetic implication. Mitochondrial Dna. Part B, Resources. 6: 2681-2682. PMID 34435117 DOI: 10.1080/23802359.2021.1935355   
2021 Darphorn TS, Hu Y, Koenders-van Sintanneland BB, Brul S, Ter Kuile BH. Multiplication of upon Exposure to a Beta-Lactam Antibiotic Results in a Transferable Transposon in . International Journal of Molecular Sciences. 22. PMID 34502136 DOI: 10.3390/ijms22179230   
2021 Li SY, Huang YE, Chen JY, Lai CH, Mao YC, Huang YT, Liu PY. Genomics of (newly named ) reveals a new subgroup. Microbial Genomics. 7. PMID 34448692 DOI: 10.1099/mgen.0.000626   
2021 Ye MS, Zhang JY, Yu DD, Xu M, Xu L, Lv LB, Zhu QY, Fan Y, Yao YG. Comprehensive annotation of the Chinese tree shrew genome by large-scale RNA sequencing and long-read isoform sequencing. Zoological Research. 42: 692-709. PMID 34581030 DOI: 10.24272/j.issn.2095-8137.2021.272   
2021 Finn EH, Misteli T. A high-throughput DNA FISH protocol to visualize genome regions in human cells. Star Protocols. 2: 100741. PMID 34458868 DOI: 10.1016/j.xpro.2021.100741   
2021 Liu J, Wang J, Wang M, Zhao J, Zheng Y, Zhang T, Xue L, Lei J. Genome-Wide Analysis of the R2R3-MYB Gene Family in × and Its Function Identification During Anthocyanins Biosynthesis in Pink-Flowered Strawberry. Frontiers in Plant Science. 12: 702160. PMID 34527006 DOI: 10.3389/fpls.2021.702160   
2021 Zhang X, Gu S, Zheng X, Peng S, Li Y, Lin Y, Liang S. A Novel and Efficient Genome Editing Tool Assisted by CRISPR-Cas12a/Cpf1 for . Acs Synthetic Biology. PMID 34644057 DOI: 10.1021/acssynbio.1c00172   
2021 Papp LA, Ács-Szabó L, Batta G, Miklós I. Molecular and comparative genomic analyses reveal evolutionarily conserved and unique features of the Schizosaccharomyces japonicus mycelial growth and the underlying genomic changes. Current Genetics. PMID 34427722 DOI: 10.1007/s00294-021-01206-y