Year |
Citation |
Score |
2024 |
Moore JE, Pratt HE, Fan K, Phalke N, Fisher J, Elhajjajy SI, Andrews G, Gao M, Shedd N, Fu Y, Lacadie MC, Meza J, Ganna M, Choudhury E, Swofford R, ... ... Mortazavi A, et al. An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional Regulation. Biorxiv : the Preprint Server For Biology. PMID 39763870 DOI: 10.1101/2024.12.26.629296 |
0.39 |
|
2024 |
Loving R, Sullivan DK, Reese F, Rebboah E, Sakr J, Rezaie N, Liang HY, Filimban G, Kawauchi S, Oakes C, Trout D, Williams BA, MacGregor G, Wold BJ, Mortazavi A, et al. Long-read sequencing transcriptome quantification with lr-kallisto. Biorxiv : the Preprint Server For Biology. PMID 39071335 DOI: 10.1101/2024.07.19.604364 |
0.618 |
|
2024 |
Rebboah E, Rezaie N, Williams BA, Weimer AK, Shi M, Yang X, Liang HY, Dionne LA, Reese F, Trout D, Jou J, Youngworth I, Reinholdt L, Morabito S, Snyder MP, ... ... Mortazavi A, et al. The ENCODE mouse postnatal developmental time course identifies regulatory programs of cell types and cell states. Biorxiv : the Preprint Server For Biology. PMID 38915583 DOI: 10.1101/2024.06.12.598567 |
0.613 |
|
2024 |
Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G, Behera AK, Gonzalez Martinez JM, Hunt T, Lagarde J, Liang CE, ... ... Mortazavi A, et al. Systematic assessment of long-read RNA-seq methods for transcript identification and quantification. Nature Methods. PMID 38849569 DOI: 10.1038/s41592-024-02298-3 |
0.663 |
|
2024 |
Chen L, Kong X, Johnston KG, Mortazavi A, Holmes TC, Tan Z, Yokomori K, Xu X. Single-cell spatial transcriptomics reveals a dystrophic trajectory following a developmental bifurcation of myoblast cell fates in facioscapulohumeral muscular dystrophy. Genome Research. PMID 38777608 DOI: 10.1101/gr.278717.123 |
0.316 |
|
2024 |
Rezaie N, Rebboah E, Williams BA, Liang HY, Reese F, Balderrama-Gutierrez G, Dionne LA, Reinholdt L, Trout D, Wold BJ, Mortazavi A. Identification of robust cellular programs using reproducible LDA that impact sex-specific disease progression in different genotypes of a mouse model of AD. Biorxiv : the Preprint Server For Biology. PMID 38464087 DOI: 10.1101/2024.02.26.582178 |
0.6 |
|
2023 |
Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G, Behera AK, Gonzalez JM, Hunt T, Lagarde J, Liang CE, ... ... Mortazavi A, et al. Systematic assessment of long-read RNA-seq methods for transcript identification and quantification. Biorxiv : the Preprint Server For Biology. PMID 37546854 DOI: 10.1101/2023.07.25.550582 |
0.662 |
|
2023 |
Hitz B, Lee JW, Jolanki O, Kagda M, Graham K, Sud P, Gabdank I, Strattan JS, Sloan C, Dreszer T, Rowe L, Podduturi N, Malladi V, Chan E, Davidson J, ... ... Mortazavi A, et al. The ENCODE Uniform Analysis Pipelines. Research Square. PMID 37503119 DOI: 10.21203/rs.3.rs-3111932/v1 |
0.609 |
|
2023 |
Reese F, Williams B, Balderrama-Gutierrez G, Wyman D, Çelik MH, Rebboah E, Rezaie N, Trout D, Razavi-Mohseni M, Jiang Y, Borsari B, Morabito S, Liang HY, McGill CJ, Rahmanian S, ... ... Mortazavi A, et al. The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity. Biorxiv : the Preprint Server For Biology. PMID 37292896 DOI: 10.1101/2023.05.15.540865 |
0.664 |
|
2023 |
Hitz BC, Lee JW, Jolanki O, Kagda MS, Graham K, Sud P, Gabdank I, Seth Strattan J, Sloan CA, Dreszer T, Rowe LD, Podduturi NR, Malladi VS, Chan ET, Davidson JM, ... ... Mortazavi A, et al. The ENCODE Uniform Analysis Pipelines. Biorxiv : the Preprint Server For Biology. PMID 37066421 DOI: 10.1101/2023.04.04.535623 |
0.609 |
|
2023 |
Rozowsky J, Gao J, Borsari B, Yang YT, Galeev T, Gürsoy G, Epstein CB, Xiong K, Xu J, Li T, Liu J, Yu K, Berthel A, Chen Z, Navarro F, ... ... Mortazavi A, et al. The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models. Cell. 186: 1493-1511.e40. PMID 37001506 DOI: 10.1016/j.cell.2023.02.018 |
0.615 |
|
2022 |
Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, Shen Y, ... ... Mortazavi A, et al. Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. PMID 35474001 DOI: 10.1038/s41586-021-04226-3 |
0.566 |
|
2022 |
Jansen C, Paraiso KD, Zhou JJ, Blitz IL, Fish MB, Charney RM, Cho JS, Yasuoka Y, Sudou N, Bright AR, Wlizla M, Veenstra GJC, Taira M, Zorn AM, Mortazavi A, et al. Uncovering the mesendoderm gene regulatory network through multi-omic data integration. Cell Reports. 38: 110364. PMID 35172134 DOI: 10.1016/j.celrep.2022.110364 |
0.406 |
|
2021 |
Moore JE, Zhang XO, Elhajjajy SI, Fan K, Pratt HE, Reese F, Mortazavi A, Weng Z. Integration of high-resolution promoter profiling assays reveals novel, cell type-specific transcription start sites across 115 human cell and tissue types. Genome Research. PMID 34949670 DOI: 10.1101/gr.275723.121 |
0.437 |
|
2021 |
Rebboah E, Reese F, Williams K, Balderrama-Gutierrez G, McGill C, Trout D, Rodriguez I, Liang H, Wold BJ, Mortazavi A. Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq. Genome Biology. 22: 286. PMID 34620214 DOI: 10.1186/s13059-021-02505-w |
0.659 |
|
2021 |
Macias-Muñoz A, Mortazavi A. A Bioinformatics Pipeline for Investigating Molecular Evolution and Gene Expression using RNA-seq. Journal of Visualized Experiments : Jove. PMID 34125087 DOI: 10.3791/61633 |
0.35 |
|
2021 |
Chang D, Serra L, Lu D, Mortazavi A, Dillman A. A Revised Adaptation of the Smart-Seq2 Protocol for Single-Nematode RNA-Seq. Methods in Molecular Biology (Clifton, N.J.). 2170: 79-99. PMID 32797452 DOI: 10.1007/978-1-0716-0743-5_6 |
0.683 |
|
2020 |
Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, ... ... Mortazavi A, et al. Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. 583: 699-710. PMID 32728249 DOI: 10.1038/S41586-020-2493-4 |
0.694 |
|
2020 |
Partridge EC, Chhetri SB, Prokop JW, Ramaker RC, Jansen CS, Goh ST, Mackiewicz M, Newberry KM, Brandsmeier LA, Meadows SK, Messer CL, Hardigan AA, Coppola CJ, Dean EC, Jiang S, ... ... Mortazavi A, et al. Occupancy maps of 208 chromatin-associated proteins in one human cell type. Nature. 583: 720-728. PMID 32728244 DOI: 10.1038/S41586-020-2023-4 |
0.68 |
|
2020 |
Jiang S, Williams K, Kong X, Zeng W, Nguyen NV, Ma X, Tawil R, Yokomori K, Mortazavi A. Single-nucleus RNA-seq identifies divergent populations of FSHD2 myotube nuclei. Plos Genetics. 16: e1008754. PMID 32365093 DOI: 10.1371/Journal.Pgen.1008754 |
0.316 |
|
2020 |
Ionkina AA, Balderrama-Gutierrez G, Phan SH, Mortazavi A, Prescher JA. Abstract 2496: Comparative transcriptome analysis of metastatic heterogeneity in a mouse model of breast cancer Cancer Research. 80: 2496-2496. DOI: 10.1158/1538-7445.Am2020-2496 |
0.403 |
|
2019 |
Macias-Muñoz A, Murad R, Mortazavi A. Molecular evolution and expression of opsin genes in Hydra vulgaris. Bmc Genomics. 20: 992. PMID 31847811 DOI: 10.1186/S12864-019-6349-Y |
0.43 |
|
2019 |
Jansen C, Ramirez RN, El-Ali NC, Gomez-Cabrero D, Tegner J, Merkenschlager M, Conesa A, Mortazavi A. Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps. Plos Computational Biology. 15: e1006555. PMID 31682608 DOI: 10.1371/Journal.Pcbi.1006555 |
0.344 |
|
2019 |
Gomez-Cabrero D, Tarazona S, Ferreirós-Vidal I, Ramirez RN, Company C, Schmidt A, Reijmers T, Paul VVS, Marabita F, Rodríguez-Ubreva J, Garcia-Gomez A, Carroll T, Cooper L, Liang Z, Dharmalingam G, ... ... Mortazavi A, et al. STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse. Scientific Data. 6: 256. PMID 31672995 DOI: 10.1038/S41597-019-0202-7 |
0.351 |
|
2019 |
Rahmanian S, Murad R, Breschi A, Zeng W, Mackiewicz M, Williams B, Davis CA, Roberts B, Meadows S, Moore D, Trout D, Zaleski C, Dobin A, Sei LH, Drenkow J, ... ... Mortazavi A, et al. Dynamics of microRNA expression during mouse prenatal development. Genome Research. PMID 31645363 DOI: 10.1101/Gr.248997.119 |
0.567 |
|
2019 |
Serra L, Macchietto M, Macias-Muñoz A, McGill CJ, Rodriguez IM, Rodriguez B, Murad R, Mortazavi A. Hybrid Assembly of the Genome of the Entomopathogenic Nematode Identifies the X-chromosome. G3 (Bethesda, Md.). PMID 31113823 DOI: 10.1534/g3.119.400180 |
0.346 |
|
2019 |
Chang DZ, Serra L, Lu D, Mortazavi A, Dillman AR. A core set of venom proteins is released by entomopathogenic nematodes in the genus Steinernema. Plos Pathogens. 15: e1007626. PMID 31042778 DOI: 10.1371/Journal.Ppat.1007626 |
0.62 |
|
2019 |
Fung L, Guzman H, Sevrioukov E, Idica A, Park E, Bochnakian A, Daugaard I, Jury D, Mortazavi A, Zisoulis DG, Pedersen IM. miR-128 Restriction of LINE-1 (L1) Retrotransposition Is Dependent on Targeting hnRNPA1 mRNA. International Journal of Molecular Sciences. 20. PMID 31010097 DOI: 10.3390/Ijms20081955 |
0.343 |
|
2019 |
Ferreirós-Vidal I, Carroll T, Zhang T, Lagani V, Ramirez RN, Ing-Simmons E, Garcia A, Cooper L, Liang Z, Papoutsoglou G, Dharmalingam G, Guo Y, Tarazona S, Fernandes SJ, Noori P, ... ... Mortazavi A, et al. Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation. Plos Biology. 17: e2006506. PMID 30978178 DOI: 10.1371/Journal.Pbio.2006506 |
0.366 |
|
2018 |
Tardaguila M, de la Fuente L, Marti C, Pereira C, Pardo-Palacios FJ, Del Risco H, Ferrell M, Mellado M, Macchietto M, Verheggen K, Edelmann M, Ezkurdia I, Vazquez J, Tress M, Mortazavi A, et al. Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification. Genome Research. 28: 1096. PMID 29967126 DOI: 10.1101/Gr.239137.118 |
0.372 |
|
2018 |
Wyman D, Mortazavi A. TranscriptClean: Variant-aware correction of indels, mismatches, and splice junctions in long-read transcripts. Bioinformatics (Oxford, England). PMID 29912287 DOI: 10.1093/Bioinformatics/Bty483 |
0.452 |
|
2018 |
Nguyen K, Aggarwal MB, Feng C, Balderrama G, Fazio M, Mortazavi A, Spitale RC. Spatially-Restricting Bioorthogonal Nucleoside Biosynthesis Enables Selective Metabolic Labeling of the Mitochondrial Transcriptome. Acs Chemical Biology. PMID 29756767 DOI: 10.1021/Acschembio.8B00262 |
0.366 |
|
2018 |
Jiang S, Mortazavi A. Integrating ChIP-seq with other functional genomics data. Briefings in Functional Genomics. PMID 29579165 DOI: 10.1093/bfgp/ely002 |
0.407 |
|
2018 |
Serra L, Chang DZ, Macchietto M, Williams K, Murad R, Lu D, Dillman AR, Mortazavi A. Adapting the Smart-seq2 Protocol for Robust Single Worm RNA-seq. Bio-Protocol. 8. PMID 29564372 DOI: 10.21769/BioProtoc.2729 |
0.671 |
|
2018 |
Tardaguila M, de la Fuente L, Marti C, Pereira C, Pardo-Palacios FJ, Del Risco H, Ferrell M, Mellado M, Macchietto M, Verheggen K, Edelmann M, Ezkurdia I, Vazquez J, Tress M, Mortazavi A, et al. SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification. Genome Research. PMID 29440222 DOI: 10.1101/Gr.222976.117 |
0.443 |
|
2018 |
Sierra RA, Hoverter NP, Ramirez RN, Vuong LM, Mortazavi A, Merrill BJ, Waterman ML, Donovan PJ. TCF7L1 suppresses primitive streak gene expression to support human embryonic stem cell pluripotency. Development (Cambridge, England). PMID 29361574 DOI: 10.1242/Dev.161075 |
0.36 |
|
2017 |
Longabaugh WJR, Zeng W, Zhang JA, Hosokawa H, Jansen CS, Li L, Romero-Wolf M, Liu P, Kueh HY, Mortazavi A, Rothenberg EV. Bcl11b and combinatorial resolution of cell fate in the T-cell gene regulatory network. Proceedings of the National Academy of Sciences of the United States of America. 114: 5800-5807. PMID 28584128 DOI: 10.1073/Pnas.1610617114 |
0.596 |
|
2017 |
Lu D, Macchietto M, Chang D, Barros MM, Baldwin J, Mortazavi A, Dillman AR. Activated entomopathogenic nematode infective juveniles release lethal venom proteins. Plos Pathogens. 13: e1006302. PMID 28426766 DOI: 10.1371/Journal.Ppat.1006302 |
0.647 |
|
2017 |
Ramirez RN, El-Ali NC, Mager MA, Wyman D, Conesa A, Mortazavi A. Dynamic Gene Regulatory Networks of Human Myeloid Differentiation. Cell Systems. PMID 28365152 DOI: 10.1016/J.Cels.2017.03.005 |
0.427 |
|
2017 |
Singh-Taylor A, Molet J, Jiang S, Korosi A, Bolton JL, Noam Y, Simeone K, Cope J, Chen Y, Mortazavi A, Baram TZ. NRSF-dependent epigenetic mechanisms contribute to programming of stress-sensitive neurons by neonatal experience, promoting resilience. Molecular Psychiatry. PMID 28070121 DOI: 10.1038/Mp.2016.240 |
0.315 |
|
2017 |
Plikus MV, Guerrero-Juarez CF, Ito M, Li YR, Dedhia PH, Zheng Y, Shao M, Gay DL, Ramos R, His TC, Oh JW, Wang X, Ramirez A, Konopelski SE, Elzein A, ... ... Mortazavi A, et al. Regeneration of fat cells from myofibroblasts during wound healing. Science (New York, N.Y.). PMID 28059714 DOI: 10.1126/Science.Aai8792 |
0.311 |
|
2016 |
Zeng W, Jiang S, Kong X, El-Ali N, Ball AR, Ma CI, Hashimoto N, Yokomori K, Mortazavi A. Single-nucleus RNA-seq of differentiating human myoblasts reveals the extent of fate heterogeneity. Nucleic Acids Research. PMID 27566152 DOI: 10.1093/Nar/Gkw739 |
0.407 |
|
2016 |
Conesa A, Madrigal P, Tarazona S, Gomez-Cabrero D, Cervera A, McPherson A, Szcześniak MW, Gaffney DJ, Elo LL, Zhang X, Mortazavi A. Erratum to: A survey of best practices for RNA-seq data analysis. Genome Biology. 17: 181. PMID 27565134 DOI: 10.1186/S13059-016-1047-4 |
0.348 |
|
2016 |
Conesa A, Madrigal P, Tarazona S, Gomez-Cabrero D, Cervera A, McPherson A, Szcześniak MW, Gaffney DJ, Elo LL, Zhang X, Mortazavi A. A survey of best practices for RNA-seq data analysis. Genome Biology. 17: 13. PMID 26813401 DOI: 10.1186/S13059-016-0881-8 |
0.47 |
|
2016 |
Blanc V, Riordan JD, Park E, Kennedy S, Madison B, Mills J, Rubin DC, Brunt E, Lee J, Ng I, Mortazavi A, Nadeau J, Davidson NO. 106 Nuclear Expression of RNA Binding Protein APOBEC-1 Complementation Factor (ACF) Regulates Liver Growth and Attenuates Tumorigenesis in Humans With Hepatocellular Carcinoma Gastroenterology. 150: S27. DOI: 10.1016/S0016-5085(16)30217-7 |
0.338 |
|
2015 |
Dillman AR, Macchietto M, Porter CF, Rogers A, Williams B, Antoshechkin I, Lee MM, Goodwin Z, Lu X, Lewis EE, Goodrich-Blair H, Stock SP, Adams BJ, Sternberg PW, Mortazavi A. Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks. Genome Biology. 16: 200. PMID 26392177 DOI: 10.1186/S13059-015-0746-6 |
0.725 |
|
2015 |
Mortazavi A. Better together: multiplexing samples to improve the preparation and reliability of gene expression studies. Nature Methods. 12: 304-5. PMID 25825835 DOI: 10.1038/Nmeth.3333 |
0.377 |
|
2015 |
Blanc V, Riordan JD, Park E, Kennedy S, Brunt E, Mortazavi A, Nadeau J, Davidson NO. 800d Liver-Specific Over-Expression of Apobec 1 Complementation Factor (A1CF) Results in Spontaneous Steatosis and Hepatocellular Carcinoma Independent of RNA Editing Gastroenterology. 148: S-1192. DOI: 10.1016/S0016-5085(15)34072-5 |
0.309 |
|
2014 |
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, ... ... Mortazavi A, et al. A comparative encyclopedia of DNA elements in the mouse genome. Nature. 515: 355-64. PMID 25409824 DOI: 10.1038/Nature13992 |
0.699 |
|
2014 |
Daniels EV, Murad R, Mortazavi A, Reed RD. Extensive transcriptional response associated with seasonal plasticity of butterfly wing patterns. Molecular Ecology. 23: 6123-34. PMID 25369871 DOI: 10.1111/Mec.12988 |
0.416 |
|
2014 |
Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, ... ... Mortazavi A, et al. Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8. PMID 25164755 DOI: 10.1038/Nature13424 |
0.456 |
|
2014 |
Conesa A, Mortazavi A. The common ground of genomics and systems biology. Bmc Systems Biology. 8: S1. PMID 25033072 DOI: 10.1186/1752-0509-8-S2-S1 |
0.39 |
|
2014 |
Blanc V, Park E, Schaefer S, Miller M, Lin Y, Kennedy S, Billing AM, Ben Hamidane H, Graumann J, Mortazavi A, Nadeau JH, Davidson NO. Genome-wide identification and functional analysis of Apobec-1-mediated C-to-U RNA editing in mouse small intestine and liver. Genome Biology. 15: R79. PMID 24946870 DOI: 10.1186/Gb-2014-15-6-R79 |
0.469 |
|
2013 |
Mortazavi A, Pepke S, Jansen C, Marinov GK, Ernst J, Kellis M, Hardison RC, Myers RM, Wold BJ. Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps. Genome Research. 23: 2136-48. PMID 24170599 DOI: 10.1101/Gr.158261.113 |
0.656 |
|
2013 |
Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW. The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle. Genetics. 193: 1279-95. PMID 23410827 DOI: 10.1534/Genetics.112.148809 |
0.746 |
|
2012 |
Dillman AR, Mortazavi A, Sternberg PW. Incorporating genomics into the toolkit of nematology. Journal of Nematology. 44: 191-205. PMID 23482088 |
0.712 |
|
2012 |
Park E, Williams B, Wold BJ, Mortazavi A. RNA editing in the human ENCODE RNA-seq data. Genome Research. 22: 1626-33. PMID 22955975 DOI: 10.1101/Gr.134957.111 |
0.68 |
|
2012 |
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA, Zaleski C, et al. Landscape of transcription in human cells. Nature. 489: 101-8. PMID 22955620 DOI: 10.1038/Nature11233 |
0.658 |
|
2012 |
Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, Canfield T, Giste E, Johnson A, Zhang M, Balasundaram G, ... ... Mortazavi A, et al. An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biology. 13: 418. PMID 22889292 DOI: 10.1186/Gb-2012-13-8-418 |
0.631 |
|
2012 |
Zhang JA, Mortazavi A, Williams BA, Wold BJ, Rothenberg EV. Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity. Cell. 149: 467-82. PMID 22500808 DOI: 10.1016/J.Cell.2012.01.056 |
0.733 |
|
2012 |
Reddy TE, Gertz J, Pauli F, Kucera KS, Varley KE, Newberry KM, Marinov GK, Mortazavi A, Williams BA, Song L, Crawford GE, Wold B, Willard HF, Myers RM. Effects of sequence variation on differential allelic transcription factor occupancy and gene expression. Genome Research. 22: 860-9. PMID 22300769 DOI: 10.1101/Gr.131201.111 |
0.661 |
|
2012 |
Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, Wang P, Poh HM, Goh Y, Lim J, Zhang J, Sim HS, Peh SQ, Mulawadi FH, Ong CT, Orlov YL, ... ... Mortazavi A, et al. Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell. 148: 84-98. PMID 22265404 DOI: 10.1016/J.Cell.2011.12.014 |
0.652 |
|
2010 |
Mortazavi A, Schwarz EM, Williams B, Schaeffer L, Antoshechkin I, Wold BJ, Sternberg PW. Scaffolding a Caenorhabditis nematode genome with RNA-seq. Genome Research. 20: 1740-7. PMID 20980554 DOI: 10.1101/Gr.111021.110 |
0.721 |
|
2010 |
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnology. 28: 511-5. PMID 20436464 DOI: 10.1038/Nbt.1621 |
0.703 |
|
2010 |
Abril J, Kokocinski F, Steijger T, Williams G, Salmon M, Mortazavi A, Raetsch G, Gerstein M, Reymond A, Gingeras T, Wold B, Guigó R, Hubbard T, Harrow J. RGASP: assessment of gene-finding tools in the high-throughput era F1000research. 1. DOI: 10.7490/F1000Research.272.1 |
0.582 |
|
2009 |
Pepke S, Wold B, Mortazavi A. Computation for ChIP-seq and RNA-seq studies Nature Methods. 6: S22-32. PMID 19844228 DOI: 10.1038/Nmeth.1371 |
0.68 |
|
2008 |
Berghella L, De Angelis L, De Buysscher T, Mortazavi A, Biressi S, Forcales SV, Sirabella D, Cossu G, Wold BJ. A highly conserved molecular switch binds MSY-3 to regulate myogenin repression in postnatal muscle. Genes & Development. 22: 2125-38. PMID 18676817 DOI: 10.1101/Gad.468508 |
0.609 |
|
2008 |
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Methods. 5: 621-8. PMID 18516045 DOI: 10.1038/Nmeth.1226 |
0.674 |
|
2007 |
Johnson DS, Mortazavi A, Myers RM, Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science (New York, N.Y.). 316: 1497-502. PMID 17540862 DOI: 10.1126/Science.1141319 |
0.665 |
|
2006 |
Mortazavi A, Leeper Thompson EC, Garcia ST, Myers RM, Wold B. Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire. Genome Research. 16: 1208-21. PMID 16963704 DOI: 10.1101/Gr.4997306 |
0.668 |
|
2006 |
Roden JC, King BW, Trout D, Mortazavi A, Wold BJ, Hart CE. Mining gene expression data by interpreting principal components. Bmc Bioinformatics. 7: 194. PMID 16600052 DOI: 10.1186/1471-2105-7-194 |
0.7 |
|
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