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Justin M. Kollman, Ph.D. - Publications

Affiliations: 
Biology McGill University, Montreal, QC, Canada 
Area:
cytoskeleton
Website:
http://kollman-lab.mcgill.ca/
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58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Shen H, Lynch EM, Watson JL, Wu K, Bai H, Sheffler W, Derivery E, Kollman J, Baker D. Nucleation limited assembly and polarized growth of a -designed allosterically modulatable protein filament. Biorxiv : the Preprint Server For Biology. PMID 39345553 DOI: 10.1101/2024.09.20.613980  0.38
2024 Lynch EM, Lu Y, Park JH, Shao L, Kollman J, Rego EH. Evolutionarily divergent CTP synthase filaments are under selective pressure. Biorxiv : the Preprint Server For Biology. PMID 39091829 DOI: 10.1101/2024.07.25.605180  0.711
2024 Shen H, Lynch EM, Akkineni S, Watson JL, Decarreau J, Bethel NP, Benna I, Sheffler W, Farrell D, DiMaio F, Derivery E, De Yoreo JJ, Kollman J, Baker D. De novo design of pH-responsive self-assembling helical protein filaments. Nature Nanotechnology. PMID 38570702 DOI: 10.1038/s41565-024-01641-1  0.341
2024 Huddy TF, Hsia Y, Kibler RD, Xu J, Bethel N, Nagarajan D, Redler R, Leung PJY, Weidle C, Courbet A, Yang EC, Bera AK, Coudray N, Calise SJ, Davila-Hernandez FA, ... ... Kollman JM, et al. Blueprinting extendable nanomaterials with standardized protein blocks. Nature. PMID 38480887 DOI: 10.1038/s41586-024-07188-4  0.419
2023 Calise SJ, O'Neill AG, Burrell AL, Dickinson MS, Molfino J, Clarke C, Quispe J, Sokolov D, Buey RM, Kollman JM. Light-sensitive phosphorylation regulates enzyme activity and filament assembly of human IMPDH1 retinal splice variants. Biorxiv : the Preprint Server For Biology. PMID 37790411 DOI: 10.1101/2023.09.21.558867  0.302
2023 Hvorecny KL, Sladewski TE, De La Cruz EM, Kollman JM, Heaslip AT. actin filaments are tuned for rapid disassembly and turnover. Biorxiv : the Preprint Server For Biology. PMID 37693530 DOI: 10.1101/2023.08.29.555340  0.3
2023 Huddy TF, Hsia Y, Kibler RD, Xu J, Bethel N, Nagarajan D, Redler R, Leung PJY, Courbet A, Yang EC, Bera AK, Coudray N, Calise SJ, Davila-Hernandez FA, Weidle C, ... ... Kollman JM, et al. Blueprinting expandable nanomaterials with standardized protein building blocks. Biorxiv : the Preprint Server For Biology. PMID 37333359 DOI: 10.1101/2023.06.09.544258  0.415
2022 Gui M, Croft JT, Zabeo D, Acharya V, Kollman JM, Burgoyne T, Höög JL, Brown A. SPACA9 is a lumenal protein of human ciliary singlet and doublet microtubules. Proceedings of the National Academy of Sciences of the United States of America. 119: e2207605119. PMID 36191189 DOI: 10.1073/pnas.2207605119  0.317
2021 Ben-Sasson AJ, Watson JL, Sheffler W, Johnson MC, Bittleston A, Somasundaram L, Decarreau J, Jiao F, Chen J, Mela I, Drabek AA, Jarrett SM, Blacklow SC, Kaminski CF, Hura GL, ... ... Kollman JM, et al. Design of biologically active binary protein 2D materials. Nature. PMID 33408408 DOI: 10.1038/s41586-020-03120-8  0.386
2020 Xu C, Lu P, Gamal El-Din TM, Pei XY, Johnson MC, Uyeda A, Bick MJ, Xu Q, Jiang D, Bai H, Reggiano G, Hsia Y, Brunette TJ, Dou J, Ma D, ... ... Kollman JM, et al. Computational design of transmembrane pores. Nature. PMID 32848250 DOI: 10.1038/S41586-020-2646-5  0.428
2020 Simonet JC, Foster MJ, Lynch EM, Kollman JM, Nicholas E, O'Reilly AM, Peterson JR. CTP synthase polymerization in germline cells of the developing egg supports egg production. Biology Open. PMID 32580972 DOI: 10.1242/Bio.050328  0.401
2020 Simonet JC, Burrell AL, Kollman JM, Peterson JR. Freedom of assembly: metabolic enzymes come together. Molecular Biology of the Cell. 31: 1201-1205. PMID 32463766 DOI: 10.1091/Mbc.E18-10-0675  0.333
2020 Lynch EM, Kollman JM, Webb BA. Filament formation by metabolic enzymes-A new twist on regulation. Current Opinion in Cell Biology. 66: 28-33. PMID 32417394 DOI: 10.1016/J.Ceb.2020.04.006  0.313
2020 Brunette TJ, Bick MJ, Hansen JM, Chow CM, Kollman JM, Baker D. Modular repeat protein sculpting using rigid helical junctions. Proceedings of the National Academy of Sciences of the United States of America. PMID 32245816 DOI: 10.1073/Pnas.1908768117  0.447
2020 Stoddard PR, Lynch EM, Farrell DP, Dosey AM, DiMaio F, Williams TA, Kollman JM, Murray AW, Garner EC. Polymerization in the actin ATPase clan regulates hexokinase activity in yeast. Science (New York, N.Y.). 367: 1039-1042. PMID 32108112 DOI: 10.1126/Science.Aay5359  0.35
2020 Johnson MC, Kollman JM. Cryo-EM structures demonstrate human IMPDH2 filament assembly tunes allosteric regulation. Elife. 9. PMID 31999252 DOI: 10.7554/Elife.53243  0.401
2020 Johnson MC, Kollman JM. Author response: Cryo-EM structures demonstrate human IMPDH2 filament assembly tunes allosteric regulation Elife. DOI: 10.7554/Elife.53243.Sa2  0.379
2020 Lynch E, Kollman J. Filament Formation Enables Highly Cooperative Regulation of Human CTP Synthase 2 The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.01759  0.32
2019 Lynch EM, Kollman JM. Coupled structural transitions enable highly cooperative regulation of human CTPS2 filaments. Nature Structural & Molecular Biology. PMID 31873303 DOI: 10.1038/S41594-019-0352-5  0.396
2019 Chen Z, Johnson MC, Chen J, Bick MJ, Boyken SE, Lin B, De Yoreo JJ, Kollman JM, Baker D, DiMaio F. Self-assembling 2D arrays with de novo protein building blocks. Journal of the American Chemical Society. PMID 31050411 DOI: 10.1021/Jacs.9B01978  0.435
2019 Burrell AL, Said M, Nie C, Johnson MC, Kollman JM. Cryo-EM Reveals IMP Dehydrogenase I Filaments Adopt Diverse Architectures Microscopy and Microanalysis. 25: 1294-1295. DOI: 10.1017/S1431927619007207  0.36
2018 Shen H, Fallas JA, Lynch E, Sheffler W, Parry B, Jannetty N, Decarreau J, Wagenbach M, Vicente JJ, Chen J, Wang L, Dowling Q, Oberdorfer G, Stewart L, Wordeman L, ... ... Kollman J, et al. De novo design of self-assembling helical protein filaments. Science (New York, N.Y.). 362: 705-709. PMID 30409885 DOI: 10.2210/Pdb6E9R/Pdb  0.495
2018 Duong-Ly KC, Kuo YM, Johnson MC, Cote JM, Kollman JM, Soboloff J, Rall GF, Andrews AJ, Peterson JR. T cell activation triggers reversible inosine-5'-monophosphate dehydrogenase assembly. Journal of Cell Science. PMID 30154209 DOI: 10.1242/Jcs.223289  0.324
2018 Usluer GD, DiMaio F, Yang SK, Hansen JM, Polka JK, Mullins RD, Kollman JM. Cryo-EM structure of the bacterial actin AlfA reveals unique assembly and ATP-binding interactions and the absence of a conserved subdomain. Proceedings of the National Academy of Sciences of the United States of America. PMID 29440491 DOI: 10.1073/Pnas.1715836115  0.429
2018 Lynch EM, Hicks DR, Shepherd M, Endrizzi JA, Maker A, Hansen JM, Barry RM, Gitai Z, Baldwin EP, Kollman JM. Human and Bacterial CTP Synthase Filament Structure and Function Diverge Biophysical Journal. 114: 161a. DOI: 10.1016/J.Bpj.2017.11.900  0.334
2018 Johnson MC, Burrell A, Anthony S, Peterson J, Kollman J. Human Inosine Monophosphate Dehydrogenase 2: Cryo-EM of Highly Flexible Filaments to Near Atomic Resolution Biophysical Journal. 114: 62a. DOI: 10.1016/J.Bpj.2017.11.386  0.301
2017 Anthony SA, Burrell AL, Johnson MC, Duong-Ly KC, Kuo YM, Simonet JC, Michener P, Andrews A, Kollman JM, Peterson JR. Reconstituted IMPDH polymers accommodate both catalytically active and inactive conformations. Molecular Biology of the Cell. PMID 28794265 DOI: 10.1091/Mbc.E17-04-0263  0.382
2017 Webb BA, Dosey AM, Wittmann T, Kollman JM, Barber DL. The glycolytic enzyme phosphofructokinase-1 assembles into filaments. The Journal of Cell Biology. PMID 28646105 DOI: 10.1016/J.Bpj.2017.11.1268  0.382
2017 Calles-Garcia D, Yang M, Soya N, Melero R, Ménade M, Ito Y, Vargas J, Lukacs GL, Kollman JM, Kozlov G, Gehring K. Single-particle electron microscopy structure of UDP-glucose:glycoprotein glucosyltransferase suggests a selectivity mechanism for misfolded proteins. The Journal of Biological Chemistry. PMID 28490633 DOI: 10.1074/Jbc.M117.789495  0.392
2017 Lynch EM, Hicks DR, Shepherd M, Endrizzi JA, Maker A, Hansen JM, Barry RM, Gitai Z, Baldwin EP, Kollman JM. Human CTP synthase filament structure reveals the active enzyme conformation. Nature Structural & Molecular Biology. PMID 28459447 DOI: 10.1038/Nsmb.3407  0.398
2017 Decarreau J, Wagenbach M, Lynch E, Halpern AR, Vaughan JC, Kollman J, Wordeman L. The tetrameric kinesin Kif25 suppresses pre-mitotic centrosome separation to establish proper spindle orientation. Nature Cell Biology. PMID 28263957 DOI: 10.1038/Ncb3486  0.372
2017 Snijder J, Borst AJ, Dosey A, Walls AC, Burrell A, Reddy VS, Kollman JM, Veesler D. Vitrification after multiple rounds of sample application and blotting improves particle density on cryo-electron microscopy grids. Journal of Structural Biology. PMID 28254381 DOI: 10.1016/J.Jsb.2017.02.008  0.311
2016 Habrian C, Chandrasekhara A, Shahrvini B, Hua B, Lee J, Jesinghaus R, Barry R, Gitai Z, Kollman JM, Baldwin EP. Inhibition of E. coli CTP synthetase by NADH and other nicotinamides, and their mutual interactions with CTP and GTP. Biochemistry. PMID 27571563 DOI: 10.1021/Acs.Biochem.6B00383  0.331
2016 Bergeron JR, Hutto R, Ozyamak E, Hom N, Hansen J, Draper O, Byrne ME, Keyhani S, Komeili A, Kollman JM. Structure of the Magnetosome-associated actin-like MamK filament at sub-nanometer resolution. Protein Science : a Publication of the Protein Society. PMID 27391173 DOI: 10.1002/Pro.2979  0.434
2016 Greenberg CH, Kollman J, Zelter A, Johnson R, MacCoss MJ, Davis TN, Agard DA, Sali A. Structure of γ-tubulin small complex based on a cryo-EM map, chemical cross-links, and a remotely related structure. Journal of Structural Biology. PMID 26968363 DOI: 10.1016/J.Jsb.2016.03.006  0.541
2016 Lynch E, Kollman J. The Structural Basis of Enzyme Regulation by CTP Synthase Metabolic Filaments Biophysical Journal. 110: 26a. DOI: 10.1016/J.Bpj.2015.11.206  0.411
2015 Peng Y, Moritz M, Han X, Giddings TH, Lyon A, Kollman J, Winey M, Yates J, Agard DA, Drubin DG, Barnes G. Interaction of CK1δ with γTuSC ensures proper microtubule assembly and spindle positioning. Molecular Biology of the Cell. 26: 2505-18. PMID 25971801 DOI: 10.1091/Mbc.E14-12-1627  0.562
2015 Kollman JM, Greenberg CH, Li S, Moritz M, Zelter A, Fong KK, Fernandez JJ, Sali A, Kilmartin J, Davis TN, Agard DA. Ring closure activates yeast γTuRC for species-specific microtubule nucleation. Nature Structural & Molecular Biology. 22: 132-7. PMID 25599398 DOI: 10.1038/Nsmb.2953  0.562
2014 Barry RM, Bitbol AF, Lorestani A, Charles EJ, Habrian CH, Hansen JM, Li HJ, Baldwin EP, Wingreen NS, Kollman JM, Gitai Z. Large-scale filament formation inhibits the activity of CTP synthetase. Elife. 3: e03638. PMID 25030911 DOI: 10.7554/Elife.03638  0.389
2014 Polka JK, Kollman JM, Mullins RD. Accessory factors promote AlfA-dependent plasmid segregation by regulating filament nucleation, disassembly, and bundling. Proceedings of the National Academy of Sciences of the United States of America. 111: 2176-81. PMID 24481252 DOI: 10.1073/Pnas.1304127111  0.402
2013 Ozyamak E, Kollman JM, Komeili A. Bacterial actins and their diversity. Biochemistry. 52: 6928-39. PMID 24015924 DOI: 10.1021/Bi4010792  0.368
2013 Ozyamak E, Kollman J, Agard DA, Komeili A. The bacterial actin MamK: in vitro assembly behavior and filament architecture. The Journal of Biological Chemistry. 288: 4265-77. PMID 23204522 DOI: 10.1074/Jbc.M112.417030  0.59
2011 Kollman JM, Merdes A, Mourey L, Agard DA. Microtubule nucleation by γ-tubulin complexes. Nature Reviews. Molecular Cell Biology. 12: 709-21. PMID 21993292 DOI: 10.1038/Nrm3209  0.6
2011 Guillet V, Knibiehler M, Gregory-Pauron L, Remy MH, Chemin C, Raynaud-Messina B, Bon C, Kollman JM, Agard DA, Merdes A, Mourey L. Crystal structure of γ-tubulin complex protein GCP4 provides insight into microtubule nucleation. Nature Structural & Molecular Biology. 18: 915-9. PMID 21725292 DOI: 10.1038/Nsmb.2083  0.611
2011 Rivera CR, Kollman JM, Polka JK, Agard DA, Mullins RD. Architecture and assembly of a divergent member of the ParM family of bacterial actin-like proteins. The Journal of Biological Chemistry. 286: 14282-90. PMID 21339292 DOI: 10.1074/Jbc.M110.203828  0.567
2010 Kollman JM, Polka JK, Zelter A, Davis TN, Agard DA. Microtubule nucleating gamma-TuSC assembles structures with 13-fold microtubule-like symmetry. Nature. 466: 879-82. PMID 20631709 DOI: 10.1038/Nature09207  0.622
2009 Choy RM, Kollman JM, Zelter A, Davis TN, Agard DA. Localization and orientation of the gamma-tubulin small complex components using protein tags as labels for single particle EM. Journal of Structural Biology. 168: 571-4. PMID 19723581 DOI: 10.1016/J.Jsb.2009.08.012  0.713
2009 Polka JK, Kollman JM, Agard DA, Mullins RD. The structure and assembly dynamics of plasmid actin AlfA imply a novel mechanism of DNA segregation. Journal of Bacteriology. 191: 6219-30. PMID 19666709 DOI: 10.1128/Jb.00676-09  0.588
2009 Pandi L, Kollman JM, Lopez-Lira F, Burrows JM, Riley M, Doolittle RF. Two families of synthetic peptides that enhance fibrin turbidity and delay fibrinolysis by different mechanisms. Biochemistry. 48: 7201-8. PMID 19588915 DOI: 10.1021/Bi900647G  0.502
2009 Kollman JM, Pandi L, Sawaya MR, Riley M, Doolittle RF. Crystal structure of human fibrinogen. Biochemistry. 48: 3877-86. PMID 19296670 DOI: 10.1021/Bi802205G  0.548
2008 Kollman JM, Zelter A, Muller EG, Fox B, Rice LM, Davis TN, Agard DA. The structure of the gamma-tubulin small complex: implications of its architecture and flexibility for microtubule nucleation. Molecular Biology of the Cell. 19: 207-15. PMID 17978090 DOI: 10.1091/Mbc.E07-09-0879  0.72
2007 Zheng SQ, Kollman JM, Braunfeld MB, Sedat JW, Agard DA. Automated acquisition of electron microscopic random conical tilt sets. Journal of Structural Biology. 157: 148-55. PMID 17169745 DOI: 10.1016/J.Jsb.2006.10.026  0.626
2006 Doolittle RF, Kollman JM. Natively unfolded regions of the vertebrate fibrinogen molecule. Proteins. 63: 391-7. PMID 16288455 DOI: 10.1002/Prot.20758  0.521
2006 Zheng SQ, Braunfeld MB, Keszthelyi B, Branlund E, Kollman JM, Sedat JW, Agard DA. Automated acquisition of tomographic and random conical tilt series and real-time reconstruction using UCSF tmography Microscopy and Microanalysis. 12: 88-89. DOI: 10.1017/S1431927606065871  0.583
2005 Kollman JM, Quispe J. The 17A structure of the 420 kDa lobster clottable protein by single particle reconstruction from cryoelectron micrographs. Journal of Structural Biology. 151: 306-14. PMID 16129620 DOI: 10.1016/J.Jsb.2005.06.008  0.408
2005 Kollman JM, Doolittle RF. Unusual non-crystallographic symmetry in crystals of a 420 kDa crustacean clottable protein. Acta Crystallographica. Section D, Biological Crystallography. 61: 485-9. PMID 15805605 DOI: 10.1107/S0907444905000910  0.513
2001 Yang Z, Kollman JM, Pandi L, Doolittle RF. Crystal structure of native chicken fibrinogen at 2.7 A resolution. Biochemistry. 40: 12515-23. PMID 11601975 DOI: 10.1021/Bi011394P  0.556
2000 Kollman JM, Doolittle RF. Determining the relative rates of change for prokaryotic and eukaryotic proteins with anciently duplicated paralogs. Journal of Molecular Evolution. 51: 173-81. PMID 10948274 DOI: 10.1007/S002390010078  0.509
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