Richard Sheffield Criddle - Related publications

Affiliations: 
2000 Molecular and Cellular Biology University of California, Davis, Davis, CA 
Area:
Biophysics
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Brata Das B, Ghosh A, Bhattacharjee S, Bhattacharyya A. Trapped topoisomerase-DNA covalent complexes in the mitochondria and their role in human diseases. Mitochondrion. PMID 34500116 DOI: 10.1016/j.mito.2021.08.017   
2021 Menger KE, Rodríguez-Luis A, Chapman J, Nicholls TJ. Controlling the topology of mammalian mitochondrial DNA. Open Biology. 11: 210168. PMID 34547213 DOI: 10.1098/rsob.210168   
2021 Kosar M, Piccini D, Foiani M, Giannattasio M. A rapid method to visualize human mitochondrial DNA replication through rotary shadowing and transmission electron microscopy. Nucleic Acids Research. PMID 34500456 DOI: 10.1093/nar/gkab770   
2021 Hidaka T, Hashiya K, Bando T, Pandian GN, Sugiyama H. Targeted elimination of mutated mitochondrial DNA by a multi-functional conjugate capable of sequence-specific adenine alkylation. Cell Chemical Biology. PMID 34450110 DOI: 10.1016/j.chembiol.2021.08.003   
2021 Straube N, Preick M, Naylor GJP, Hofreiter M. Mitochondrial DNA sequencing of a wet-collection syntype demonstrates the importance of type material as genetic resource for lantern shark taxonomy (Chondrichthyes: Etmopteridae). Royal Society Open Science. 8: 210474. PMID 34540250 DOI: 10.1098/rsos.210474   
2021 Sercel AJ, Napior AJ, Patananan AN, Wu TH, Chiou PY, Teitell MA. Generating stable isolated mitochondrial recipient clones in mammalian cells using MitoPunch mitochondrial transfer. Star Protocols. 2: 100850. PMID 34632418 DOI: 10.1016/j.xpro.2021.100850   
2021 Huang D, Jing G, Zhang L, Chen C, Zhu S. Interplay Among Hydrogen Sulfide, Nitric Oxide, Reactive Oxygen Species, and Mitochondrial DNA Oxidative Damage. Frontiers in Plant Science. 12: 701681. PMID 34421950 DOI: 10.3389/fpls.2021.701681   
2021 Ciesielski GL, Kim S, de Bovi Pontes C, Kaguni LS. Physical and Functional Interaction of Mitochondrial Single-Stranded DNA-Binding Protein and the Catalytic Subunit of DNA Polymerase Gamma. Frontiers in Genetics. 12: 721864. PMID 34539752 DOI: 10.3389/fgene.2021.721864   
2021 Ciesielska EJ, Kim S, Bisimwa HM, Grier C, Rahman MM, Young CKJ, Young MJ, Oliveira MT, Ciesielski GL. Remdesivir triphosphate blocks DNA synthesis and increases exonucleolysis by the replicative mitochondrial DNA polymerase, Pol γ. Mitochondrion. PMID 34619353 DOI: 10.1016/j.mito.2021.09.010   
2021 Sanchez-Contreras M, Sweetwyne MT, Kohrn BF, Tsantilas KA, Hipp MJ, Schmidt EK, Fredrickson J, Whitson JA, Campbell MD, Rabinovitch PS, Marcinek DJ, Kennedy SR. A replication-linked mutational gradient drives somatic mutation accumulation and influences germline polymorphisms and genome composition in mitochondrial DNA. Nucleic Acids Research. PMID 34614167 DOI: 10.1093/nar/gkab901   
2021 Liu S, Pei P, Li L, Wu H, Zheng X, Wang S, Xiao Y, Pan H, Bao X, Qi Y, Ma Y. Mitochondrial DNA Copy Number in Rett Syndrome Caused by MECP2 Variants. The Journal of Pediatrics. PMID 34619114 DOI: 10.1016/j.jpeds.2021.09.052   
2021 Kaur P, Pan H, Longley MJ, Copeland WC, Wang H. Using Atomic Force Microscopy to Study the Real Time Dynamics of DNA Unwinding by Mitochondrial Twinkle Helicase. Bio-Protocol. 11: e4139. PMID 34604445 DOI: 10.21769/BioProtoc.4139   
2021 Sarkar S, Nambiar M. G-quadruplexes in the mitochondrial genome - a cause for instability. The Febs Journal. PMID 34405539 DOI: 10.1111/febs.16149   
2021 Lo CY, Gao Y. DNA Helicase-Polymerase Coupling in Bacteriophage DNA Replication. Viruses. 13. PMID 34578319 DOI: 10.3390/v13091739   
2021 Nitiss JL, Kiianitsa K, Sun Y, Nitiss KC, Maizels N. Topoisomerase Assays. Current Protocols. 1: e250. PMID 34606690 DOI: 10.1002/cpz1.250   
2021 Meier B, Volkova NV, Wang B, González-Huici V, Bertolini S, Campbell PJ, Gerstung M, Gartner A. C. elegans genome-wide analysis reveals DNA repair pathways that act cooperatively to preserve genome integrity upon ionizing radiation. Plos One. 16: e0258269. PMID 34614038 DOI: 10.1371/journal.pone.0258269   
2021 Kropp HM, Ludmann S, Diederichs K, Betz K, Marx A. Structural Basis for The Recognition of Deaminated Nucleobases by An Archaeal DNA Polymerase. Chembiochem : a European Journal of Chemical Biology. PMID 34486208 DOI: 10.1002/cbic.202100306   
2021 Green MR, Sambrook J. A Guide to Cloning the Products of Polymerase Chain Reactions. Cold Spring Harbor Protocols. 2021: pdb.top101345. PMID 34470865 DOI: 10.1101/pdb.top101345   
2021 Xuan J, Gitareja K, Brajanovski N, Sanij E. Harnessing the Nucleolar DNA Damage Response in Cancer Therapy. Genes. 12. PMID 34440328 DOI: 10.3390/genes12081156   
2021 Pan J, Lian K, Sarre A, Leiros HS, Williamson A. Bacteriophage origin of some minimal ATP-dependent DNA ligases: a new structure from Burkholderia pseudomallei with striking similarity to Chlorella virus ligase. Scientific Reports. 11: 18693. PMID 34548548 DOI: 10.1038/s41598-021-98155-w   
2021 Hu W, Wang Y, Yang B, Lin C, Yu H, Liu G, Deng Z, Ou HY, He X. Bacterial YedK represses plasmid DNA replication and transformation through its DNA single-strand binding activity. Microbiological Research. 252: 126852. PMID 34454309 DOI: 10.1016/j.micres.2021.126852   
2021 Lin T, Zhang L, Wu M, Jiang D, Li Z, Yang Z. Repair of Hypoxanthine in DNA Revealed by DNA Glycosylases and Endonucleases From Hyperthermophilic Archaea. Frontiers in Microbiology. 12: 736915. PMID 34531846 DOI: 10.3389/fmicb.2021.736915   
2021 Pan Q, Wang L, Liu Y, Li M, Zhang Y, Peng W, Deng T, Peng ML, Jiang JQ, Tang J, Wang J, Duan HX, Fan SS. Knockdown of POLQ interferes the development and progression of hepatocellular carcinoma through regulating cell proliferation, apoptosis and migration. Cancer Cell International. 21: 482. PMID 34517891 DOI: 10.1186/s12935-021-02178-2   
2021 Housh K, Jha JS, Yang Z, Haldar T, Johnson KM, Yin J, Wang Y, Gates KS. Formation and Repair of an Interstrand DNA Cross-Link Arising from a Common Endogenous Lesion. Journal of the American Chemical Society. PMID 34516735 DOI: 10.1021/jacs.1c06926   
2021 Kuznetsova AA, Senchurova SI, Ishchenko AA, Saparbaev M, Fedorova OS, Kuznetsov NA. Common Kinetic Mechanism of Abasic Site Recognition by Structurally Different Apurinic/Apyrimidinic Endonucleases. International Journal of Molecular Sciences. 22. PMID 34445579 DOI: 10.3390/ijms22168874   
2021 Zhang Y, Hu J, Yang XY, Zhang CY. Combination of bidirectional strand displacement amplification with single-molecule detection for multiplexed DNA glycosylases assay. Talanta. 235: 122805. PMID 34517663 DOI: 10.1016/j.talanta.2021.122805   
2021 Chan KY, Li X, Ortega J, Gu L, Li GM. DNA polymerase θ promotes CAG•CTG repeat expansions in Huntington's disease via insertion sequences of its catalytic domain. The Journal of Biological Chemistry. 101144. PMID 34473992 DOI: 10.1016/j.jbc.2021.101144   
2021 Kunisky AK, Anyaeche VI, Herron RS, Park CY, Hwang HW. Shift in MSL1 alternative polyadenylation in response to DNA damage protects cancer cells from chemotherapeutic agent-induced apoptosis. Cell Reports. 37: 109815. PMID 34644577 DOI: 10.1016/j.celrep.2021.109815   
2021 Xiao R, Wang S, Han R, Li Z, Gabel C, Mukherjee IA, Chang L. Structural basis of target DNA recognition by CRISPR-Cas12k for RNA-guided DNA transposition. Molecular Cell. PMID 34450043 DOI: 10.1016/j.molcel.2021.07.043   
2021 Xiong K, Shea D, Rhoades J, Blewett T, Liu R, Bae JH, Nguyen E, Makrigiorgos GM, Golub TR, Adalsteinsson VA. Duplex-Repair enables highly accurate sequencing, despite DNA damage. Nucleic Acids Research. PMID 34591958 DOI: 10.1093/nar/gkab855   
2021 Polleys EJ, Freudenreich CH. Homologous recombination within repetitive DNA. Current Opinion in Genetics & Development. 71: 143-153. PMID 34464817 DOI: 10.1016/j.gde.2021.08.005   
2021 Han P, Ma Y, Fu Z, Guo Z, Xie J, Wu Y, Yuan YJ. A DNA Inversion System in Eukaryotes Established via Laboratory Evolution. Acs Synthetic Biology. PMID 34420293 DOI: 10.1021/acssynbio.1c00132   
2021 Song K, Wu Y, Fu B, Wang L, Hao W, Hua F, Sun Y, Dorf ME, Li S. Leaked Mitochondrial C1QBP Inhibits Activation of the DNA Sensor cGAS. Journal of Immunology (Baltimore, Md. : 1950). PMID 34526378 DOI: 10.4049/jimmunol.2100392   
2021 Serra-Cardona A, Yu C, Zhang X, Hua X, Yao Y, Zhou J, Gan H, Zhang Z. A mechanism for Rad53 to couple leading- and lagging-strand DNA synthesis under replication stress in budding yeast. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34531325 DOI: 10.1073/pnas.2109334118   
2021 Bochtler M. Distinction between self and non-self in restriction modification: The mysterious case of type IIL enzymes. Structure (London, England : 1993). 29: 512-514. PMID 34087171 DOI: 10.1016/j.str.2021.05.007   
2021 Li S, Fu Z, Wang C, Shang X, Zhao Y, Liu C, Pei M. An ultrasensitive and specific electrochemical biosensor for DNA detection based on T7 exonuclease-assisted regulatory strand displacement amplification. Analytica Chimica Acta. 1183: 338988. PMID 34627518 DOI: 10.1016/j.aca.2021.338988   
2021 Vazquez-Villasenor I, Garwood CJ, Simpson JE, Heath PR, Mortiboys H, Wharton SB. Persistent DNA damage alters the neuronal transcriptome suggesting cell cycle dysregulation and altered mitochondrial function. The European Journal of Neuroscience. PMID 34536321 DOI: 10.1111/ejn.15466   
2021 Lee SY, Kim JJ, Miller KM. Bromodomain proteins: protectors against endogenous DNA damage and facilitators of genome integrity. Experimental & Molecular Medicine. PMID 34548613 DOI: 10.1038/s12276-021-00673-0   
2021 Yan S, Song M, Ping J, Lai ST, Cao XY, Bai CJ, Xie DF, Guan H, Gao SS, Zhou PK. ZGRF1 promotes end resection of DNA homologous recombination via forming complex with BRCA1/EXO1. Cell Death Discovery. 7: 260. PMID 34552057 DOI: 10.1038/s41420-021-00633-7   
2021 Bell NAW, Haynes PJ, Brunner K, de Oliveira TM, Flocco MM, Hoogenboom BW, Molloy JE. Single-molecule measurements reveal that PARP1 condenses DNA by loop stabilization. Science Advances. 7. PMID 34380612 DOI: 10.1126/sciadv.abf3641   
2021 Balana AT, Mukherjee A, Nagpal H, Moon SP, Fierz B, Vasquez KM, Pratt MR. O-GlcNAcylation of High Mobility Group Box 1 (HMGB1) Alters Its DNA Binding and DNA Damage Processing Activities. Journal of the American Chemical Society. PMID 34546745 DOI: 10.1021/jacs.1c06192   
2021 Brugger C, Deaconescu AM. A Gel-Based Assay for Probing Protein Translocation on dsDNA. Bio-Protocol. 11: e4094. PMID 34395731 DOI: 10.21769/BioProtoc.4094   
2021 Weeks Santos S, Cachot J, Cormier B, Mazzella N, Gourves PY, Clérandeau C, Morin B, Gonzalez P. Environmentally Relevant Mixture of Pesticides Affect Mobility and DNA Integrity of Early Life Stages of Rainbow Trout (). Toxics. 9. PMID 34437492 DOI: 10.3390/toxics9080174   
2021 Fujita T, Nagata S, Fujii H. Protein or ribonucleoprotein-mediated blocking of recombinase polymerase amplification enables the discrimination of nucleotide and epigenetic differences between cell populations. Communications Biology. 4: 988. PMID 34413466 DOI: 10.1038/s42003-021-02503-5   
2021 Kang K, Ma Y, Sadakane K. Direct visualization of local activities of long DNA strands via image-time correlation. European Biophysics Journal : Ebj. PMID 34499211 DOI: 10.1007/s00249-021-01570-0   
2021 Kang Z, Fu P, Alcivar AL, Fu H, Redon C, Foo TK, Zuo Y, Ye C, Baxley R, Madireddy A, Buisson R, Bielinsky AK, Zou L, Shen Z, Aladjem MI, et al. BRCA2 associates with MCM10 to suppress PRIMPOL-mediated repriming and single-stranded gap formation after DNA damage. Nature Communications. 12: 5966. PMID 34645815 DOI: 10.1038/s41467-021-26227-6   
2021 Marchal L, Hamsanathan S, Karthikappallil R, Han S, Shinglot H, Gurkar AU. Analysis of representative mutants for key DNA repair pathways on healthspan in Caenorhabditis elegans. Mechanisms of Ageing and Development. 111573. PMID 34562508 DOI: 10.1016/j.mad.2021.111573   
2021 Lin Y, Zhang X, Wang Y, Zhang J, Liu Q. Single-stranded DNA generated by high temperature accepts protons and builds up mutagenic and carcinogenic strong acids. Molecular Biology Reports. PMID 34643928 DOI: 10.1007/s11033-021-06804-0   
2021 Klein B, Günther C. Type I Interferon Induction in Cutaneous DNA Damage Syndromes. Frontiers in Immunology. 12: 715723. PMID 34381458 DOI: 10.3389/fimmu.2021.715723   
2021 Li J, Feng Z, Wang J, Huang G, Yan L. Interaction of aflatoxin G with free DNA and possibility of its application in removing aflatoxin G. Journal of Environmental Science and Health. Part. B, Pesticides, Food Contaminants, and Agricultural Wastes. 1-9. PMID 34554053 DOI: 10.1080/03601234.2021.1979838