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Yamuna Krishnan - Publications

Affiliations: 
2005-2014 National Center for Biological Sciences, Bengaluru, Karnataka, India 
 2014- University of Chicago, Chicago, IL 
Area:
DNA, RNA, nanotechnology, chemistry
Website:
https://chemistry.uchicago.edu/faculty/faculty/person/member/yamuna-krishnan.html
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53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Osei-Owusu J, Yang J, Leung KH, Ruan Z, Lü W, Krishnan Y, Qiu Z. Proton-activated chloride channel PAC regulates endosomal acidification and transferrin receptor-mediated endocytosis. Cell Reports. 34: 108683. PMID 33503418 DOI: 10.1016/j.celrep.2020.108683  0.51
2020 Veetil AT, Zou J, Henderson KW, Jani MS, Shaik SM, Sisodia SS, Hale ME, Krishnan Y. DNA-based fluorescent probes of NOS2 activity in live brains. Proceedings of the National Academy of Sciences of the United States of America. PMID 32554491 DOI: 10.1073/Pnas.2003034117  0.33
2020 Jani MS, Veetil AT, Krishnan Y. Controlled release of bioactive signaling molecules. Methods in Enzymology. 638: 129-138. PMID 32416910 DOI: 10.1016/Bs.Mie.2020.02.018  0.323
2020 Jani MS, Zou J, Veetil AT, Krishnan Y. A DNA-based fluorescent probe maps NOS3 activity with subcellular spatial resolution. Nature Chemical Biology. PMID 32152543 DOI: 10.1038/S41589-020-0491-3  0.334
2019 Leung K, Krishnan Y. Dynamic RNA Nanotechnology Enters the CRISPR Toolbox. Acs Central Science. 5: 1111-1113. PMID 31404241 DOI: 10.1021/Acscentsci.9B00550  0.514
2019 Sharma S, Zajac M, Krishnan Y. A DNA aptamer for cyclic adenosine monophosphate that shows adaptive recognition. Chembiochem : a European Journal of Chemical Biology. PMID 31099939 DOI: 10.1002/Cbic.201900259  0.393
2019 Dan K, Veetil AT, Chakraborty K, Krishnan Y. DNA nanodevices map enzymatic activity in organelles. Nature Nanotechnology. PMID 30742135 DOI: 10.1038/S41565-019-0365-6  0.335
2019 Prakash V, Tsekouras K, Venkatachalapathy M, Heineke L, Presse S, Walter N, Krishnan Y. Quantitative maps of endosomal DNA processing by single molecule counting. Angewandte Chemie (International Ed. in English). PMID 30667589 DOI: 10.1002/Anie.201811746  0.377
2019 Narayanaswamy N, Chakraborty K, Saminathan A, Zeichner E, Leung K, Devany J, Krishnan Y. Author Correction: A pH-correctable, DNA-based fluorescent reporter for organellar calcium. Nature Methods. PMID 30643216 DOI: 10.1038/S41592-019-0309-Y  0.589
2019 Jani MS, Veetil AT, Krishnan Y. Precision immunomodulation with synthetic nucleic acid technologies Nature Reviews Materials. 4: 451-458. DOI: 10.1038/S41578-019-0105-4  0.381
2018 Narayanaswamy N, Chakraborty K, Saminathan A, Zeichner E, Leung K, Devany J, Krishnan Y. A pH-correctable, DNA-based fluorescent reporter for organellar calcium. Nature Methods. PMID 30532082 DOI: 10.1038/S41592-018-0232-7  0.571
2018 Thekkan S, Jani MS, Cui C, Dan K, Zhou G, Becker L, Krishnan Y. A DNA-based fluorescent reporter maps HOCl production in the maturing phagosome. Nature Chemical Biology. PMID 30531966 DOI: 10.1038/S41589-018-0176-3  0.369
2018 Leung K, Chakraborty K, Saminathan A, Krishnan Y. A DNA nanomachine chemically resolves lysosomes in live cells. Nature Nanotechnology. PMID 30510277 DOI: 10.1038/S41565-018-0318-5  0.586
2018 Veetil AT, Jani MS, Krishnan Y. Chemical control over membrane-initiated steroid signaling with a DNA nanocapsule. Proceedings of the National Academy of Sciences of the United States of America. PMID 29531078 DOI: 10.1073/Pnas.1712792115  0.36
2018 Surana S, Krishnan Y. Making Worms Glow Resonance. 23: 291-298. DOI: 10.1007/S12045-018-0618-Y  0.433
2017 Banerjee A, Grazon C, Pons T, Bhatia D, Valades-Cruz CA, Johannes L, Krishnan Y, Dubertret B. A novel type of quantum dot-transferrin conjugate using DNA hybridization mimics intracellular recycling of endogenous transferrin. Nanoscale. PMID 28976518 DOI: 10.1039/C7Nr05838A  0.362
2017 Veetil AT, Chakraborty K, Xiao K, Minter MR, Sisodia SS, Krishnan Y. Cell-targetable DNA nanocapsules for spatiotemporal release of caged bioactive small molecules. Nature Nanotechnology. PMID 28825714 DOI: 10.1038/Nnano.2017.159  0.349
2017 Chakraborty K, Leung K, Krishnan Y. High lumenal chloride in the lysosome is critical for lysosome function. Elife. 6. PMID 28742019 DOI: 10.7554/Elife.28862  0.599
2017 Joshi H, Bhatia D, Krishnan Y, Maiti PK. Probing the structure and in silico stability of cargo loaded DNA icosahedra using MD simulations. Nanoscale. PMID 28304019 DOI: 10.1039/C6Nr08036G  0.405
2016 Prakash V, Saha S, Chakraborty K, Krishnan Y. Rational design of a quantitative, pH-insensitive, nucleic acid based fluorescent chloride reporter. Chemical Science. 7: 1946-1953. PMID 30050672 DOI: 10.1039/C5Sc04002G  0.407
2016 Bhatia D, Arumugam S, Nasilowski M, Joshi H, Wunder C, Chambon V, Prakash V, Grazon C, Nadal B, Maiti PK, Johannes L, Dubertret B, Krishnan Y. Quantum dot-loaded monofunctionalized DNA icosahedra for single-particle tracking of endocytic pathways. Nature Nanotechnology. PMID 27548358 DOI: 10.1038/Nnano.2016.150  0.378
2016 Chakraborty K, Veetil AT, Jaffrey SR, Krishnan Y. Nucleic Acid-Based Nanodevices in Biological Imaging. Annual Review of Biochemistry. 85: 349-73. PMID 27294440 DOI: 10.1146/Annurev-Biochem-060815-014244  0.322
2015 Surana S, Shenoy AR, Krishnan Y. Designing DNA nanodevices for compatibility with the immune system of higher organisms. Nature Nanotechnology. 10: 741-7. PMID 26329110 DOI: 10.1038/Nnano.2015.180  0.334
2015 Saha S, Prakash V, Halder S, Chakraborty K, Krishnan Y. A pH-independent DNA nanodevice for quantifying chloride transport in organelles of living cells. Nature Nanotechnology. PMID 26098226 DOI: 10.1038/Nnano.2015.130  0.409
2015 Lannes L, Halder S, Krishnan Y, Schwalbe H. Tuning the pH Response of i-Motif DNA Oligonucleotides. Chembiochem : a European Journal of Chemical Biology. 16: 1647-56. PMID 26032298 DOI: 10.1002/Cbic.201500182  0.397
2015 Banerjee A, Grazon C, Nadal B, Pons T, Krishnan Y, Dubertret B. Fast, efficient and stable conjugation of multiple DNA strands on colloidal quantum dots. Bioconjugate Chemistry. PMID 25992903 DOI: 10.1021/Acs.Bioconjchem.5B00221  0.372
2015 Halder S, Krishnan Y. Design of ultrasensitive DNA-based fluorescent pH sensitive nanodevices. Nanoscale. 7: 10008-12. PMID 25990365 DOI: 10.1039/C5Nr01158B  0.403
2014 Modi S, Halder S, Nizak C, Krishnan Y. Recombinant antibody mediated delivery of organelle-specific DNA pH sensors along endocytic pathways. Nanoscale. 6: 1144-52. PMID 24297098 DOI: 10.1039/C3Nr03769J  0.43
2013 Banerjee A, Bhatia D, Saminathan A, Chakraborty S, Kar S, Krishnan Y. Controlled release of encapsulated cargo from a DNA icosahedron using a chemical trigger. Angewandte Chemie (International Ed. in English). 52: 6854-7. PMID 23716499 DOI: 10.1002/Anie.201302759  0.399
2013 Modi S, Nizak C, Surana S, Halder S, Krishnan Y. Two DNA nanomachines map pH changes along intersecting endocytic pathways inside the same cell. Nature Nanotechnology. 8: 459-67. PMID 23708428 DOI: 10.1038/Nnano.2013.92  0.408
2013 Surana S, Bhatia D, Krishnan Y. A method to study in vivo stability of DNA nanostructures. Methods (San Diego, Calif.). 64: 94-100. PMID 23623822 DOI: 10.1016/J.Ymeth.2013.04.002  0.412
2013 Bhatia D, Chakraborty S, Mehtab S, Krishnan Y. A method to encapsulate molecular cargo within DNA icosahedra. Methods in Molecular Biology (Clifton, N.J.). 991: 65-80. PMID 23546660 DOI: 10.1007/978-1-62703-336-7_8  0.394
2013 Surana S, Krishnan Y. A method to map spatiotemporal pH changes in a multicellular living organism using a DNA nanosensor. Methods in Molecular Biology (Clifton, N.J.). 991: 9-23. PMID 23546654 DOI: 10.1007/978-1-62703-336-7_2  0.397
2012 Krishnan Y, Bathe M. Designer nucleic acids to probe and program the cell. Trends in Cell Biology. 22: 624-33. PMID 23140833 DOI: 10.1016/J.Tcb.2012.10.001  0.327
2012 Bhatia D, Chakraborty S, Krishnan Y. Gene delivery: Designer DNA give RNAi more spine. Nature Nanotechnology. 7: 344-6. PMID 22659610 DOI: 10.1038/Nnano.2012.87  0.366
2012 Saha S, Chakraborty K, Krishnan Y. Tunable, colorimetric DNA-based pH sensors mediated by A-motif formation. Chemical Communications (Cambridge, England). 48: 2513-5. PMID 22278189 DOI: 10.1039/C2Cc16347K  0.357
2011 Modi S, Krishnan Y. A method to map spatiotemporal pH changes inside living cells using a pH-triggered DNA nanoswitch. Methods in Molecular Biology (Clifton, N.J.). 749: 61-77. PMID 21674365 DOI: 10.1007/978-1-61779-142-0_5  0.437
2011 Surana S, Bhat JM, Koushika SP, Krishnan Y. An autonomous DNA nanomachine maps spatiotemporal pH changes in a multicellular living organism. Nature Communications. 2: 340. PMID 21654640 DOI: 10.1038/Ncomms1340  0.42
2011 Bhatia D, Surana S, Chakraborty S, Koushika SP, Krishnan Y. A synthetic icosahedral DNA-based host-cargo complex for functional in vivo imaging. Nature Communications. 2: 339. PMID 21654639 DOI: 10.1038/Ncomms1337  0.417
2011 Bhatia D, Sharma S, Krishnan Y. Synthetic, biofunctional nucleic acid-based molecular devices. Current Opinion in Biotechnology. 22: 475-84. PMID 21652202 DOI: 10.1016/J.Copbio.2011.05.004  0.394
2011 Krishnan Y, Simmel FC. Nucleic acid based molecular devices. Angewandte Chemie (International Ed. in English). 50: 3124-56. PMID 21432950 DOI: 10.1002/Anie.200907223  0.355
2010 Saha S, Bhatia D, Krishnan Y. pH-Toggled DNA architectures: reversible assembly of three-way junctions into extended 1D architectures through A-motif formation. Small (Weinheim An Der Bergstrasse, Germany). 6: 1288-92. PMID 20486230 DOI: 10.1002/Smll.201000330  0.388
2010 Modi S, Bhatia D, Simmel FC, Krishnan Y. Structural DNA nanotechnology: From bases to bricks, from structure to function Journal of Physical Chemistry Letters. 1: 1994-2005. DOI: 10.1021/Jz1004957  0.375
2010 Krishnan Y. The I-Switch: a DNA Nanomachine that Maps Spatiotemporal pH Changes in Living Systems Biophysical Journal. 98: 410a. DOI: 10.1016/J.Bpj.2009.12.2209  0.429
2009 Modi S, M G S, Goswami D, Gupta GD, Mayor S, Krishnan Y. A DNA nanomachine that maps spatial and temporal pH changes inside living cells. Nature Nanotechnology. 4: 325-30. PMID 19421220 DOI: 10.1038/Nnano.2009.83  0.462
2009 Chakraborty S, Sharma S, Maiti PK, Krishnan Y. The poly dA helix: a new structural motif for high performance DNA-based molecular switches. Nucleic Acids Research. 37: 2810-7. PMID 19279188 DOI: 10.1093/Nar/Gkp133  0.397
2009 Bhatia D, Mehtab S, Krishnan R, Indi SS, Basu A, Krishnan Y. Icosahedral DNA nanocapsules by modular assembly. Angewandte Chemie (International Ed. in English). 48: 4134-7. PMID 19222079 DOI: 10.1002/Anie.200806000  0.356
2008 Paul A, Sengupta P, Krishnan Y, Ladame S. Combining G-quadruplex targeting motifs on a single peptide nucleic acid scaffold: a hybrid (3+1) PNA-DNA bimolecular quadruplex. Chemistry (Weinheim An Der Bergstrasse, Germany). 14: 8682-9. PMID 18668497 DOI: 10.1002/Chem.200800605  0.641
2008 Chakraborty S, Krishnan Y. Kinetic hybrid i-motifs: intercepting DNA with RNA to form a DNA(2)-RNA(2) i-motif. Biochimie. 90: 1088-95. PMID 18358847 DOI: 10.1016/J.Biochi.2008.02.022  0.422
2008 Krishnan Y. DNA’s new avatar as nanoscale construction material Resonance. 13: 195-197. DOI: 10.1007/S12045-008-0033-X  0.333
2007 Ghodke HB, Krishnan R, Vignesh K, Kumar GV, Narayana C, Krishnan Y. The I-tetraplex building block: rational design and controlled fabrication of robust 1D DNA scaffolds through non-Watson-Crick interactions. Angewandte Chemie (International Ed. in English). 46: 2646-9. PMID 17330917 DOI: 10.1002/Anie.200604461  0.32
2006 Pitchiaya S, Krishnan Y. First blueprint, now bricks: DNA as construction material on the nanoscale. Chemical Society Reviews. 35: 1111-21. PMID 17057840 DOI: 10.1039/B602886C  0.381
2006 Modi S, Wani AH, Krishnan Y. The PNA-DNA hybrid I-motif: implications for sugar-sugar contacts in i-motif tetramerization. Nucleic Acids Research. 34: 4354-63. PMID 16936319 DOI: 10.1093/Nar/Gkl443  0.436
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