Uri Laserson - Publications

Affiliations: 
2001-2005 Mathematics New York University 
 2005-2012 HST Harvard & MIT, Cambridge, MA, United States 
 2012-2016 Data Science Cloudera 
 2016-2020 Genetics and Genomic Sciences Icahn School of Medicine at Mount Sinai, New York, NY, United States 
 2020- Patch Biosciences 
Area:
genomics, immunology

25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Gruber CN, Patel RS, Trachtman R, Lepow L, Amanat F, Krammer F, Wilson KM, Onel K, Geanon D, Tuballes K, Patel M, Mouskas K, O'Donnell T, Merritt E, Simons NW, ... ... Laserson U, et al. Mapping Systemic Inflammation and Antibody Responses in Multisystem Inflammatory Syndrome in Children (MIS-C). Cell. 186: 3325. PMID 37478820 DOI: 10.1016/j.cell.2023.06.012  0.595
2021 Lopez-Bujanda ZA, Obradovic A, Nirschl TR, Crowley L, Macedo R, Papachristodoulou A, O'Donnell T, Laserson U, Zarif JC, Reshef R, Yuan T, Soni MK, Antonarakis ES, Haffner MC, Larman HB, et al. TGM4: an immunogenic prostate-restricted antigen. Journal For Immunotherapy of Cancer. 9. PMID 34193566 DOI: 10.1136/jitc-2020-001649  0.569
2020 Cantarelli C, Jarque M, Angeletti A, Manrique J, Hartzell S, O'Donnell T, Merritt E, Laserson U, Perin L, Donadei C, Anderson L, Fischman C, Chan E, Draibe J, Fulladosa X, et al. A Comprehensive Phenotypic and Functional Immune Analysis Unravels Circulating Anti-Phospholipase A2 Receptor Antibody Secreting Cells in Membranous Nephropathy Patients. Kidney International Reports. 5: 1764-1776. PMID 33102969 DOI: 10.1016/J.Ekir.2020.07.028  0.63
2020 O'Donnell TJ, Rubinsteyn A, Laserson U. MHCflurry 2.0: Improved Pan-Allele Prediction of MHC Class I-Presented Peptides by Incorporating Antigen Processing. Cell Systems. 11: 418-419. PMID 33091335 DOI: 10.1016/j.cels.2020.09.001  0.621
2020 Gruber CN, Patel RS, Trachtman R, Lepow L, Amanat F, Krammer F, Wilson KM, Onel K, Geanon D, Tuballes K, Patel M, Mouskas K, O'Donnell T, Merritt E, Simons NW, ... ... Laserson U, et al. Mapping Systemic Inflammation and Antibody Responses in Multisystem Inflammatory Syndrome in Children (MIS-C). Cell. PMID 32991843 DOI: 10.1016/J.Cell.2020.09.034  0.63
2020 O'Donnell TJ, Rubinsteyn A, Laserson U. MHCflurry 2.0: Improved Pan-Allele Prediction of MHC Class I-Presented Peptides by Incorporating Antigen Processing. Cell Systems. 11: 42-48.e7. PMID 32711842 DOI: 10.1016/J.Cels.2020.06.010  0.654
2019 O’Donnell TJ, Shan M, Merritt E, Gugel EG, Blasquez AB, Meseck M, Friedlander PA, Rubinsteyn A, Horowitz A, Bhardwaj N, Laserson U. Abstract B032: PhIP-seq assessment of the serum antibody repertoire before and after immune-related adverse events in four melanoma patients treated with checkpoint blockade immunotherapy Cancer Immunology Research. 7. DOI: 10.1158/2326-6074.Cricimteatiaacr18-B032  0.412
2018 Vander Heiden JA, Marquez S, Marthandan N, Bukhari SAC, Busse CE, Corrie B, Hershberg U, Kleinstein SH, Matsen Iv FA, Ralph DK, Rosenfeld AM, Schramm CA, Christley S, Laserson U. AIRR Community Standardized Representations for Annotated Immune Repertoires. Frontiers in Immunology. 9: 2206. PMID 30323809 DOI: 10.3389/Fimmu.2018.02206  0.331
2018 Mohan D, Wansley DL, Sie BM, Noon MS, Baer AN, Laserson U, Larman HB. PhIP-Seq characterization of serum antibodies using oligonucleotide-encoded peptidomes. Nature Protocols. PMID 30190553 DOI: 10.1038/S41596-018-0025-6  0.436
2018 O'Donnell TJ, Rubinsteyn A, Bonsack M, Riemer AB, Laserson U, Hammerbacher J. MHCflurry: Open-Source Class I MHC Binding Affinity Prediction. Cell Systems. PMID 29960884 DOI: 10.1016/J.Cels.2018.05.014  0.636
2017 Breden F, Luning Prak ET, Peters B, Rubelt F, Schramm CA, Busse CE, Vander Heiden JA, Christley S, Bukhari SAC, Thorogood A, Matsen Iv FA, Wine Y, Laserson U, Klatzmann D, Douek DC, et al. Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data. Frontiers in Immunology. 8: 1418. PMID 29163494 DOI: 10.3389/Fimmu.2017.01418  0.302
2017 Rubelt F, Busse CE, Bukhari SAC, Bürckert JP, Mariotti-Ferrandiz E, Cowell LG, Watson CT, Marthandan N, Faison WJ, Hershberg U, Laserson U, Corrie BD, Davis MM, Peters B, Lefranc MP, et al. Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data. Nature Immunology. 18: 1274-1278. PMID 29144493 DOI: 10.1038/Ni.3873  0.3
2015 Doores KJ, Kong L, Krumm SA, Le KM, Sok D, Laserson U, Garces F, Poignard P, Wilson IA, Burton DR. Two classes of broadly neutralizing antibodies within a single lineage directed to the high-mannose patch of HIV envelope. Journal of Virology. 89: 1105-18. PMID 25378488 DOI: 10.1128/Jvi.02905-14  0.353
2014 Laserson U, Vigneault F, Gadala-Maria D, Yaari G, Uduman M, Vander Heiden JA, Kelton W, Taek Jung S, Liu Y, Laserson J, Chari R, Lee JH, Bachelet I, Hickey B, Lieberman-Aiden E, et al. High-resolution antibody dynamics of vaccine-induced immune responses. Proceedings of the National Academy of Sciences of the United States of America. 111: 4928-33. PMID 24639495 DOI: 10.1073/Pnas.1323862111  0.559
2013 Yaari G, Vander Heiden JA, Uduman M, Gadala-Maria D, Gupta N, Stern JN, O'Connor KC, Hafler DA, Laserson U, Vigneault F, Kleinstein SH. Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data. Frontiers in Immunology. 4: 358. PMID 24298272 DOI: 10.3389/Fimmu.2013.00358  0.303
2013 Sok D, Laserson U, Laserson J, Liu Y, Vigneault F, Julien JP, Briney B, Ramos A, Saye KF, Le K, Mahan A, Wang S, Kardar M, Yaari G, Walker LM, et al. The effects of somatic hypermutation on neutralization and binding in the PGT121 family of broadly neutralizing HIV antibodies. Plos Pathogens. 9: e1003754. PMID 24278016 DOI: 10.1371/Journal.Ppat.1003754  0.489
2013 Zhu J, Larman HB, Gao G, Somwar R, Zhang Z, Laserson U, Ciccia A, Pavlova N, Church G, Zhang W, Kesari S, Elledge SJ. Protein interaction discovery using parallel analysis of translated ORFs (PLATO). Nature Biotechnology. 31: 331-4. PMID 23503679 DOI: 10.1038/Nbt.2539  0.445
2013 Larman HB, Laserson U, Querol L, Verhaeghen K, Solimini NL, Xu GJ, Klarenbeek PL, Church GM, Hafler DA, Plenge RM, Nigrovic PA, De Jager PL, Weets I, Martens GA, O'Connor KC, et al. PhIP-Seq characterization of autoantibodies from patients with multiple sclerosis, type 1 diabetes and rheumatoid arthritis. Journal of Autoimmunity. 43: 1-9. PMID 23497938 DOI: 10.1016/J.Jaut.2013.01.013  0.529
2013 Sok D, Laserson U, Laserson J, Liu Y, Vigneault F, Julien J, Briney B, Ramos A, Saye KF, Le K, Mahan A, Wang S, Kardar M, Yaari G, Walker LM, et al. Correction: The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies Plos Pathogens. 9. DOI: 10.1371/annotation/f1f8c791-61e9-45c6-a455-92c6dadf9f06  0.388
2011 Larman HB, Zhao Z, Laserson U, Li MZ, Ciccia A, Gakidis MA, Church GM, Kesari S, Leproust EM, Solimini NL, Elledge SJ. Autoantigen discovery with a synthetic human peptidome. Nature Biotechnology. 29: 535-41. PMID 21602805 DOI: 10.1038/Nbt.1856  0.503
2006 Laserson U, Gan HH, Schlick T. Exploring the Connection Between Synthetic and Natural RNAs in Genomes: A Novel Computational Approach Lecture Notes in Computational Science and Engineering. 49: 35-56.  0.478
2005 Laserson U, Gan HH, Schlick T. Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs. Nucleic Acids Research. 33: 6057-69. PMID 16254081 DOI: 10.1093/Nar/Gki911  0.532
2004 Fera D, Kim N, Shiffeldrim N, Zorn J, Laserson U, Gan HH, Schlick T. RAG: RNA-As-Graphs web resource. Bmc Bioinformatics. 5: 88. PMID 15238163 DOI: 10.1186/1471-2105-5-88  0.509
2004 Gan HH, Fera D, Zorn J, Shiffeldrim N, Tang M, Laserson U, Kim N, Schlick T. RAG: RNA-As-Graphs database--concepts, analysis, and features. Bioinformatics (Oxford, England). 20: 1285-91. PMID 14962931 DOI: 10.1093/Bioinformatics/Bth084  0.508
2004 Laserson U, Gan HH, Schlick T. Searching for 2D RNA geometries in bacterial genomes Proceedings of the Annual Symposium On Computational Geometry. 373-377.  0.468
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