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Josh V Vermaas - Publications

Affiliations: 
Michigan State University, PRL 
Area:
Molecular simulation, lignin, permeability
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kulke M, Kurtz E, Boren DM, Olson DM, Koenig AM, Hoffmann-Benning S, Vermaas JV. PLAT domain protein 1 (PLAT1/PLAFP) binds to the Arabidopsis thaliana plasma membrane and inserts a lipid. Plant Science : An International Journal of Experimental Plant Biology. 338: 111900. PMID 37863269 DOI: 10.1016/j.plantsci.2023.111900  0.427
2023 Raza S, Sievertsen TH, Okumoto S, Vermaas JV. Passive permeability controls synthesis for the allelochemical sorgoleone in sorghum root exudate. Phytochemistry. 217: 113891. PMID 37844789 DOI: 10.1016/j.phytochem.2023.113891  0.382
2023 Kulke M, Weraduwage SM, Sharkey TD, Vermaas JV. Nanoscale simulation of the thylakoid membrane response to extreme temperatures. Plant, Cell & Environment. PMID 37212244 DOI: 10.1111/pce.14609  0.412
2023 Sarkar D, Bu L, Jakes JE, Zieba JK, Kaufman ID, Crowley MF, Ciesielski PN, Vermaas JV. Diffusion in intact secondary cell wall models of plants at different equilibrium moisture content. Cell Surface (Amsterdam, Netherlands). 9: 100105. PMID 37063382 DOI: 10.1016/j.tcsw.2023.100105  0.491
2023 Raza S, Miller M, Hamberger B, Vermaas JV. Plant Terpenoid Permeability through Biological Membranes Explored via Molecular Simulations. The Journal of Physical Chemistry. B. 127: 1144-1157. PMID 36717085 DOI: 10.1021/acs.jpcb.2c07209  0.443
2022 Uchiyama T, Uchihashi T, Ishida T, Nakamura A, Vermaas JV, Crowley MF, Samejima M, Beckham GT, Igarashi K. Lytic polysaccharide monooxygenase increases cellobiohydrolases activity by promoting decrystallization of cellulose surface. Science Advances. 8: eade5155. PMID 36563138 DOI: 10.1126/sciadv.ade5155  0.61
2022 Vermaas JV, Crowley MF, Beckham GT. Molecular simulation of lignin-related aromatic compound permeation through gram-negative bacterial outer membranes. The Journal of Biological Chemistry. 102627. PMID 36273587 DOI: 10.1016/j.jbc.2022.102627  0.721
2021 Vermaas JV, Mayne CG, Shinn E, Tajkhorshid E. Assembly and Analysis of Cell-Scale Membrane Envelopes. Journal of Chemical Information and Modeling. PMID 34910495 DOI: 10.1021/acs.jcim.1c01050  0.579
2020 Thornburg NE, Pecha MB, Brandner DG, Reed ML, Vermaas JV, Michener WE, Katahira R, Vinzant TB, Foust TD, Donohoe BS, Román-Leshkov Y, Ciesielski PN, Beckham G. Mesoscale reaction-diffusion phenomena governing lignin-first biomass fractionation. Chemsuschem. PMID 32246557 DOI: 10.1002/Cssc.202000558  0.461
2019 Vermaas JV, Kont R, Beckham GT, Crowley MF, Gudmundsson M, Sandgren M, Ståhlberg J, Väljamäe P, Knott BC. The dissociation mechanism of processive cellulases. Proceedings of the National Academy of Sciences of the United States of America. PMID 31666327 DOI: 10.1073/pnas.1913398116  0.61
2019 Vermaas JV, Dixon RA, Chen F, Mansfield SD, Boerjan W, Ralph J, Crowley MF, Beckham GT. Passive membrane transport of lignin-related compounds. Proceedings of the National Academy of Sciences of the United States of America. PMID 31659054 DOI: 10.1073/Pnas.1904643116  0.714
2018 Zheng F, Vermaas JV, Zheng J, Wang Y, Tu T, Wang X, Xie X, Yao B, Beckham GT, Luo H. Characterizing Activity and Thermostability of GH5 Endoglucanase Chimeras from Mesophilic and Thermophilic Parents. Applied and Environmental Microbiology. PMID 30552196 DOI: 10.1128/Aem.02079-18  0.445
2018 Vermaas JV, Bentley GJ, Beckham GT, Crowley MF. Membrane Permeability of Terpenoids Explored with Molecular Simulation. The Journal of Physical Chemistry. B. PMID 30352510 DOI: 10.1021/Acs.Jpcb.8B08688  0.696
2018 Vermaas JV, Rempe SB, Tajkhorshid E. Electrostatic lock in the transport cycle of the multidrug resistance transporter EmrE. Proceedings of the National Academy of Sciences of the United States of America. 115: E7502-E7511. PMID 30026196 DOI: 10.1073/pnas.1722399115  0.482
2017 Vermaas JV, Beckham GT, Crowley MF. Membrane Permeability of Fatty Acyl Compounds Studied via Molecular Simulation. The Journal of Physical Chemistry. B. PMID 29040809 DOI: 10.1021/Acs.Jpcb.7B08233  0.691
2017 Vermaas JV, Pogorelov TV, Tajkhorshid E. Extension of the Highly Mobile Membrane Mimetic to Transmembrane Systems through Customized in Silico Solvents. The Journal of Physical Chemistry. B. PMID 28241729 DOI: 10.1021/Acs.Jpcb.6B11378  0.741
2017 Vermaas JV, Tajkhorshid E. Differential Membrane Binding Mechanics of Synaptotagmin Isoforms Observed in Atomic Detail. Biochemistry. 56: 281-293. PMID 27997124 DOI: 10.1021/Acs.Biochem.6B00468  0.577
2016 Sun C, Taguchi AT, Vermaas JV, Beal NJ, O'Malley PJ, Tajkhorshid E, Gennis RB, Dikanov SA. Q-band ENDOR reveals out of plane hydrogen bonds stabilize an anionic ubisemiquinone in cytochrome bo3 from Escherichia coli. Biochemistry. PMID 27622672 DOI: 10.1021/Acs.Biochem.6B00669  0.386
2016 Vermaas JV, Hardy DJ, Stone JE, Tajkhorshid E, Kohlmeyer A. TopoGromacs: Automated Topology Conversion from CHARMM to Gromacs within VMD. Journal of Chemical Information and Modeling. PMID 27196035 DOI: 10.1021/Acs.Jcim.6B00103  0.454
2016 Mayne CG, Arcario MJ, Mahinthichaichan P, Baylon JL, Vermaas JV, Navidpour L, Wen PC, Thangapandian S, Tajkhorshid E. The Cellular Membrane as a Mediator for Small Molecule Interaction with Membrane Proteins. Biochimica Et Biophysica Acta. PMID 27163493 DOI: 10.1016/J.Bbamem.2016.04.016  0.61
2016 Baylon JL, Vermaas JV, Muller MP, Arcario MJ, Pogorelov TV, Tajkhorshid E. Atomic-Level Description of Protein-Lipid Interactions Using an Accelerated Membrane Model. Biochimica Et Biophysica Acta. PMID 26940626 DOI: 10.1016/J.Bbamem.2016.02.027  0.756
2015 Qi Y, Cheng X, Lee J, Vermaas JV, Pogorelov TV, Tajkhorshid E, Park S, Klauda JB, Im W. CHARMM-GUI HMMM Builder for Membrane Simulations with the Highly Mobile Membrane-Mimetic Model. Biophysical Journal. 109: 2012-2022. PMID 26588561 DOI: 10.1016/J.Bpj.2015.10.008  0.752
2015 Vermaas JV, Baylon JL, Arcario MJ, Muller MP, Wu Z, Pogorelov TV, Tajkhorshid E. Efficient Exploration of Membrane-Associated Phenomena at Atomic Resolution. The Journal of Membrane Biology. 248: 563-82. PMID 25998378 DOI: 10.1007/S00232-015-9806-9  0.764
2015 Vermaas JV, Crowley MF, Beckham GT, Payne CM. Effects of lytic polysaccharide monooxygenase oxidation on cellulose structure and binding of oxidized cellulose oligomers to cellulases. The Journal of Physical Chemistry. B. 119: 6129-43. PMID 25785779 DOI: 10.1021/Acs.Jpcb.5B00778  0.669
2015 Vermaas JV, Taguchi AT, Dikanov SA, Wraight CA, Tajkhorshid E. Redox potential tuning through differential quinone binding in the photosynthetic reaction center of Rhodobacter sphaeroides. Biochemistry. 54: 2104-16. PMID 25734689 DOI: 10.1021/Acs.Biochem.5B00033  0.429
2014 Vermaas JV, Tajkhorshid E. Conformational heterogeneity of α-synuclein in membrane. Biochimica Et Biophysica Acta. 1838: 3107-17. PMID 25135664 DOI: 10.1016/J.Bbamem.2014.08.012  0.628
2014 Pogorelov TV, Vermaas JV, Arcario MJ, Tajkhorshid E. Partitioning of amino acids into a model membrane: capturing the interface. The Journal of Physical Chemistry. B. 118: 1481-92. PMID 24451004 DOI: 10.1021/Jp4089113  0.756
2014 Vermaas JV, Tajkhorshid E. A microscopic view of phospholipid insertion into biological membranes. The Journal of Physical Chemistry. B. 118: 1754-64. PMID 24313792 DOI: 10.1021/Jp409854W  0.643
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