Year |
Citation |
Score |
2023 |
Donati S, Mattanovich M, Hjort P, Jacobsen SAB, Blomquist SD, Mangaard D, Gurdo N, Pastor FP, Maury J, Hanke R, Herrgård MJ, Wulff T, Jakočiūnas T, Nielsen LK, McCloskey D. An automated workflow for multi-omics screening of microbial model organisms. Npj Systems Biology and Applications. 9: 14. PMID 37208327 DOI: 10.1038/s41540-023-00277-6 |
0.591 |
|
2023 |
Peluso AA, Lundgaard AT, Babaei P, Mousovich-Neto F, Rocha AL, Damgaard MV, Bak EG, Gnanasekaran T, Dollerup OL, Trammell SAJ, Nielsen TS, Kern T, Abild CB, Sulek K, Ma T, ... ... McCloskey D, et al. Oral supplementation of nicotinamide riboside alters intestinal microbial composition in rats and mice, but not humans. Npj Aging. 9: 7. PMID 37012386 DOI: 10.1038/s41514-023-00106-4 |
0.557 |
|
2020 |
Dahlin J, Holkenbrink C, Marella ER, Wang G, Liebal U, Lieven C, Weber D, McCloskey D, Wang HL, Ebert BE, Herrgård MJ, Blank LM, Borodina I. Corrigendum: Multi-Omics Analysis of Fatty Alcohol Production in Engineered Yeasts and . Frontiers in Genetics. 11: 637738. PMID 33505441 DOI: 10.3389/fgene.2020.637738 |
0.563 |
|
2020 |
Kutuzova S, Colaianni P, Röst H, Sachsenberg T, Alka O, Kohlbacher O, Burla B, Torta F, Schrübbers L, Kristensen M, Nielsen L, Herrgård MJ, McCloskey D. SmartPeak Automates Targeted and Quantitative Metabolomics Data Processing. Analytical Chemistry. PMID 33269929 DOI: 10.1021/acs.analchem.0c03421 |
0.558 |
|
2020 |
Ambri F, D'Ambrosio V, Di Blasi R, Maury J, Jacobsen SAB, McCloskey D, Jensen MK, Keasling JD. High-resolution scanning of optimal biosensor reporter promoters in yeast. Acs Synthetic Biology. PMID 31935067 DOI: 10.1021/Acssynbio.9B00333 |
0.4 |
|
2019 |
Dahlin J, Holkenbrink C, Marella ER, Wang G, Liebal U, Lieven C, Weber D, McCloskey D, Ebert BE, Herrgård MJ, Blank LM, Borodina I. Multi-Omics Analysis of Fatty Alcohol Production in Engineered Yeasts and . Frontiers in Genetics. 10: 747. PMID 31543895 DOI: 10.3389/Fgene.2019.00747 |
0.596 |
|
2019 |
Cheng C, O'Brien EJ, McCloskey D, Utrilla J, Olson C, LaCroix RA, Sandberg TE, Feist AM, Palsson BO, King ZA. Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism. Plos Computational Biology. 15: e1007066. PMID 31158228 DOI: 10.1371/Journal.Pcbi.1007066 |
0.768 |
|
2019 |
Yang JH, Wright SN, Hamblin M, McCloskey D, Alcantar MA, Schrübbers L, Lopatkin AJ, Satish S, Nili A, Palsson BO, Walker GC, Collins JJ. A White-Box Machine Learning Approach for Revealing Antibiotic Mechanisms of Action. Cell. PMID 31080069 DOI: 10.1016/J.Cell.2019.04.016 |
0.455 |
|
2018 |
McCloskey D, Xu S, Sandberg TE, Brunk E, Hefner Y, Szubin R, Feist AM, Palsson BO. Evolution of gene knockout strains of E. coli reveal regulatory architectures governed by metabolism. Nature Communications. 9: 3796. PMID 30228271 DOI: 10.1038/S41467-018-06219-9 |
0.788 |
|
2018 |
McCloskey D, Xu S, Sandberg TE, Brunk E, Hefner Y, Szubin R, Feist AM, Palsson BO. Growth Adaptation of and Deletion Strains Diverges From a Similar Initial Perturbation of the Transcriptome. Frontiers in Microbiology. 9: 1793. PMID 30131786 DOI: 10.3389/Fmicb.2018.01793 |
0.795 |
|
2018 |
McCloskey D, Xu S, Sandberg TE, Brunk E, Hefner Y, Szubin R, Feist AM, Palsson BO. Multiple optimal phenotypes overcome redox and glycolytic intermediate metabolite imbalances in knockout evolutions. Applied and Environmental Microbiology. PMID 30054360 DOI: 10.1128/Aem.00823-18 |
0.792 |
|
2018 |
McCloskey D, Xu S, Sandberg TE, Brunk E, Hefner Y, Szubin R, Feist AM, Palsson BO. Adaptive laboratory evolution resolves energy depletion to maintain high aromatic metabolite phenotypes in Escherichia coli strains lacking the Phosphotransferase System. Metabolic Engineering. PMID 29906504 DOI: 10.1016/J.Ymben.2018.06.005 |
0.774 |
|
2018 |
McCloskey D, Xu S, Sandberg TE, Brunk E, Hefner Y, Szubin R, Feist AM, Palsson BO. Adaptation to the coupling of glycolysis to toxic methylglyoxal production in tpiA deletion strains of Escherichia coli requires synchronized and counterintuitive genetic changes. Metabolic Engineering. PMID 29842925 DOI: 10.1016/J.Ymben.2018.05.012 |
0.799 |
|
2018 |
McCloskey D, Xu J, Schrübbers L, Christensen HB, Herrgård MJ. RapidRIP quantifies the intracellular metabolome of 7 industrial strains of E. coli. Metabolic Engineering. PMID 29702276 DOI: 10.1016/J.Ymben.2018.04.009 |
0.641 |
|
2017 |
Yang JH, Bhargava P, McCloskey D, Mao N, Palsson BO, Collins JJ. Antibiotic-Induced Changes to the Host Metabolic Environment Inhibit Drug Efficacy and Alter Immune Function. Cell Host & Microbe. 22: 757-765.e3. PMID 29199098 DOI: 10.1016/J.Chom.2017.10.020 |
0.427 |
|
2017 |
Wordofa GG, Kristensen M, Schrübbers L, McCloskey D, Forster J, Schneider K. Quantifying the metabolome of Pseudomonas taiwanensis VLB120: Evaluation of hot and cold combined quenching/extraction approaches. Analytical Chemistry. PMID 28727413 DOI: 10.1021/Acs.Analchem.7B00793 |
0.657 |
|
2016 |
Brunk E, George KW, Alonso-Gutierrez J, Thompson M, Baidoo E, Wang G, Petzold CJ, McCloskey D, Monk J, Yang L, O'Brien EJ, Batth TS, Martin HG, Feist A, Adams PD, et al. Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow. Cell Systems. PMID 27211860 DOI: 10.1016/J.Cels.2016.04.004 |
0.74 |
|
2016 |
Utrilla J, O'Brien EJ, Chen K, McCloskey D, Cheung J, Wang H, Armenta-Medina D, Feist AM, Palsson BO. Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution. Cell Systems. 2: 260-271. PMID 27135538 DOI: 10.1016/J.Cels.2016.04.003 |
0.747 |
|
2016 |
McCloskey D, Young JD, Xu S, Palsson BØ, Feist AM. A modeling method for increased precision and scope of directly measurable fluxes at a genome-scale. Analytical Chemistry. PMID 26981784 DOI: 10.1021/Acs.Analchem.5B04914 |
0.706 |
|
2015 |
Bordbar A, McCloskey D, Zielinski DC, Sonnenschein N, Jamshidi N, Palsson BO. Personalized Whole-Cell Kinetic Models of Metabolism for Discovery in Genomics and Pharmacodynamics. Cell Systems. 1: 283-292. PMID 27136057 DOI: 10.1016/J.Cels.2015.10.003 |
0.739 |
|
2015 |
McCloskey D, Young JD, Xu S, Palsson BØ, Feist AM. MID Max: A LC-MS/MS method for measuring the precursor and product mass isotopomer distributions (MIDs) of metabolic intermediates and cofactors for metabolic flux analysis (MFA) applications. Analytical Chemistry. PMID 26666286 DOI: 10.1021/Acs.Analchem.5B03887 |
0.679 |
|
2014 |
Lewis CA, Parker SJ, Fiske BP, McCloskey D, Gui DY, Green CR, Vokes NI, Feist AM, Vander Heiden MG, Metallo CM. Tracing compartmentalized NADPH metabolism in the cytosol and mitochondria of mammalian cells. Molecular Cell. 55: 253-63. PMID 24882210 DOI: 10.1016/J.Molcel.2014.05.008 |
0.63 |
|
2014 |
McCloskey D, Gangoiti JA, King ZA, Naviaux RK, Barshop BA, Palsson BO, Feist AM. A model-driven quantitative metabolomics analysis of aerobic and anaerobic metabolism in E. coli K-12 MG1655 that is biochemically and thermodynamically consistent. Biotechnology and Bioengineering. 111: 803-15. PMID 24249002 DOI: 10.1002/Bit.25133 |
0.714 |
|
2013 |
McCloskey D, Palsson BØ, Feist AM. Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli. Molecular Systems Biology. 9: 661. PMID 23632383 DOI: 10.1038/Msb.2013.18 |
0.716 |
|
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