| Year |
Citation |
Score |
| 2024 |
Bonato A, Chiang M, Corbett D, Kitaev S, Marenduzzo D, Morozov A, Orlandini E. Topological Spectra and Entropy of Chromatin Loop Networks. Physical Review Letters. 132: 248403. PMID 38949344 DOI: 10.1103/PhysRevLett.132.248403 |
0.348 |
|
| 2022 |
Bonato A, Marenduzzo D, Michieletto D, Orlandini E. Topological gelation of reconnecting polymers. Proceedings of the National Academy of Sciences of the United States of America. 119: e2207728119. PMID 36279471 DOI: 10.1073/pnas.2207728119 |
0.726 |
|
| 2021 |
Chiang M, Brackley CA, Marenduzzo D, Gilbert N. Predicting genome organisation and function with mechanistic modelling. Trends in Genetics : Tig. PMID 34857425 DOI: 10.1016/j.tig.2021.11.001 |
0.316 |
|
| 2021 |
Fosado YAG, Michieletto D, Brackley CA, Marenduzzo D. Nonequilibrium dynamics and action at a distance in transcriptionally driven DNA supercoiling. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33649196 DOI: 10.1073/pnas.1905215118 |
0.681 |
|
| 2021 |
Ryu JK, Bouchoux C, Liu HW, Kim E, Minamino M, de Groot R, Katan AJ, Bonato A, Marenduzzo D, Michieletto D, Uhlmann F, Dekker C. Bridging-induced phase separation induced by cohesin SMC protein complexes. Science Advances. 7. PMID 33568486 DOI: 10.1126/sciadv.abe5905 |
0.666 |
|
| 2021 |
Ancona M, Michieletto D, Marenduzzo D. Competition between local erasure and long-range spreading of a single biochemical mark leads to epigenetic bistability. Physical Review. E. 101: 042408. PMID 32422714 DOI: 10.1103/PhysRevE.101.042408 |
0.64 |
|
| 2020 |
Colì D, Orlandini E, Michieletto D, Marenduzzo D. Magnetic polymer models for epigenetics-driven chromosome folding. Physical Review. E. 100: 052410. PMID 31869901 DOI: 10.1103/PhysRevE.100.052410 |
0.698 |
|
| 2020 |
Michieletto D, Colì D, Marenduzzo D, Orlandini E. Nonequilibrium Theory of Epigenomic Microphase Separation in the Cell Nucleus. Physical Review Letters. 123: 228101. PMID 31868408 DOI: 10.1103/PhysRevLett.123.228101 |
0.651 |
|
| 2019 |
Chiang M, Michieletto D, Brackley CA, Rattanavirotkul N, Mohammed H, Marenduzzo D, Chandra T. Polymer Modeling Predicts Chromosome Reorganization in Senescence. Cell Reports. 28: 3212-3223.e6. PMID 31533042 DOI: 10.1016/j.celrep.2019.08.045 |
0.685 |
|
| 2019 |
Forte G, Caraglio M, Marenduzzo D, Orlandini E. Plectoneme dynamics and statistics in braided polymers. Physical Review. E. 99: 052503. PMID 31212427 DOI: 10.1103/PhysRevE.99.052503 |
0.333 |
|
| 2019 |
Orlandini E, Marenduzzo D, Michieletto D. Synergy of topoisomerase and structural-maintenance-of-chromosomes proteins creates a universal pathway to simplify genome topology. Proceedings of the National Academy of Sciences of the United States of America. 116: 8149-8154. PMID 30962387 DOI: 10.1073/pnas.1815394116 |
0.682 |
|
| 2018 |
Buckle A, Brackley CA, Boyle S, Marenduzzo D, Gilbert N. Polymer Simulations of Heteromorphic Chromatin Predict the 3D Folding of Complex Genomic Loci. Molecular Cell. PMID 30344096 DOI: 10.1016/j.molcel.2018.09.016 |
0.341 |
|
| 2017 |
Michieletto D, Marenduzzo D, Orlandini E, Turner MS. Ring Polymers: Threadings, Knot Electrophoresis and Topological Glasses. Polymers. 9. PMID 30971026 DOI: 10.3390/Polym9080349 |
0.72 |
|
| 2017 |
Michieletto D, Chiang M, Colì D, Papantonis A, Orlandini E, Cook PR, Marenduzzo D. Shaping epigenetic memory via genomic bookmarking. Nucleic Acids Research. PMID 29190361 DOI: 10.1093/Nar/Gkx1200 |
0.671 |
|
| 2017 |
Brackley CA, Liebchen B, Michieletto D, Mouvet F, Cook PR, Marenduzzo D. Ephemeral Protein Binding to DNA Shapes Stable Nuclear Bodies and Chromatin Domains. Biophysical Journal. 112: 1085-1093. PMID 28355537 DOI: 10.1016/J.Bpj.2017.01.025 |
0.667 |
|
| 2016 |
Brackley CA, Brown JM, Waithe D, Babbs C, Davies J, Hughes JR, Buckle VJ, Marenduzzo D. Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models. Genome Biology. 17: 59. PMID 27036497 DOI: 10.1186/s13059-016-0909-0 |
0.311 |
|
| 2015 |
Michieletto D, Marenduzzo D, Orlandini E. Topological patterns in two-dimensional gel electrophoresis of DNA knots. Proceedings of the National Academy of Sciences of the United States of America. 112: E5471-7. PMID 26351668 DOI: 10.1073/pnas.1506907112 |
0.665 |
|
| 2015 |
Michieletto D, Marenduzzo D, Orlandini E. Is the kinetoplast DNA a percolating network of linked rings at its critical point? Physical Biology. 12: 036001. PMID 25970016 DOI: 10.1088/1478-3975/12/3/036001 |
0.669 |
|
| 2014 |
Michieletto D, Marenduzzo D, Orlandini E, Alexander GP, Turner MS. Threading Dynamics of Ring Polymers in a Gel. Acs Macro Letters. 3: 255-259. PMID 35590516 DOI: 10.1021/mz500060c |
0.719 |
|
| 2014 |
Michieletto D, Marenduzzo D, Orlandini E, Alexander GP, Turner MS. Dynamics of self-threading ring polymers in a gel. Soft Matter. 10: 5936-44. PMID 24985134 DOI: 10.1039/C4Sm00619D |
0.714 |
|
| 2013 |
Marenduzzo D, Micheletti C, Orlandini E, Sumners de W. Topological friction strongly affects viral DNA ejection. Proceedings of the National Academy of Sciences of the United States of America. 110: 20081-6. PMID 24272939 DOI: 10.1073/pnas.1306601110 |
0.304 |
|
| 2009 |
Marenduzzo D, Orlandini E, Stasiak A, Sumners de W, Tubiana L, Micheletti C. DNA-DNA interactions in bacteriophage capsids are responsible for the observed DNA knotting. Proceedings of the National Academy of Sciences of the United States of America. 106: 22269-74. PMID 20018693 DOI: 10.1073/pnas.0907524106 |
0.315 |
|
| 2003 |
Marenduzzo D, Micheletti C. Thermodynamics of DNA packaging inside a viral capsid: the role of DNA intrinsic thickness. Journal of Molecular Biology. 330: 485-92. PMID 12842465 DOI: 10.1016/s0022-2836(03)00584-9 |
0.382 |
|
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