| Year |
Citation |
Score |
| 2024 |
Xiao YX, Lee SY, Aguilera-Uribe M, Samson R, Au A, Khanna Y, Liu Z, Cheng R, Aulakh K, Wei J, Farias AG, Reilly T, Birkadze S, Habsid A, Brown KR, ... ... Myers C, et al. The TSC22D, WNK, and NRBP gene families exhibit functional buffering and evolved with Metazoa for cell volume regulation. Cell Reports. 43: 114417. PMID 38980795 DOI: 10.1016/j.celrep.2024.114417 |
0.797 |
|
| 2024 |
Lee Y, Baughn LB, Myers CL, Sachs Z. Machine learning analysis of gene expression reveals TP53 Mutant-like AML with wild type TP53 and poor prognosis. Blood Cancer Journal. 14: 80. PMID 38744822 DOI: 10.1038/s41408-024-01061-3 |
0.775 |
|
| 2024 |
Longhurst AD, Wang K, Suresh HG, Ketavarapu M, Ward HN, Jones IR, Narayan V, Hundley FV, Hassan AZ, Boone C, Myers CL, Shen Y, Ramani V, Andrews BJ, Toczyski DP. The PRC2.1 Subcomplex Opposes G1 Progression through Regulation of CCND1 and CCND2. Biorxiv : the Preprint Server For Biology. PMID 38562687 DOI: 10.1101/2024.03.18.585604 |
0.78 |
|
| 2024 |
Hajiaghabozorgi M, Fischbach M, Albrecht M, Wang W, Myers CL. BridGE: a pathway-based analysis tool for detecting genetic interactions from GWAS. Nature Protocols. PMID 38514837 DOI: 10.1038/s41596-024-00954-8 |
0.793 |
|
| 2024 |
Liu X, Igarashi D, Hillmer RA, Stoddard T, Lu Y, Tsuda K, Myers CL, Katagiri F. Decomposition of dynamic transcriptomic responses during effector-triggered immunity reveals conserved responses in two distinct plant cell populations. Plant Communications. 100882. PMID 38486453 DOI: 10.1016/j.xplc.2024.100882 |
0.542 |
|
| 2024 |
Litsios A, Grys BT, Kraus OZ, Friesen H, Ross C, Masinas MPD, Forster DT, Couvillion MT, Timmermann S, Billmann M, Myers C, Johnsson N, Churchman LS, Boone C, Andrews BJ. Proteome-scale movements and compartment connectivity during the eukaryotic cell cycle. Cell. PMID 38452761 DOI: 10.1016/j.cell.2024.02.014 |
0.715 |
|
| 2024 |
Oram MK, Baxley RM, Simon EM, Lin K, Chang YC, Wang L, Myers CL, Bielinsky AK. RNF4 prevents genomic instability caused by chronic DNA under-replication. Dna Repair. 135: 103646. PMID 38340377 DOI: 10.1016/j.dnarep.2024.103646 |
0.52 |
|
| 2024 |
Lin K, Chang YC, Billmann M, Ward HN, Le K, Hassan AZ, Bhojoo U, Chan K, Costanzo M, Moffat J, Boone C, Bielinsky AK, Myers CL. A scalable platform for efficient CRISPR-Cas9 chemical-genetic screens of DNA damage-inducing compounds. Scientific Reports. 14: 2508. PMID 38291084 DOI: 10.1038/s41598-024-51735-y |
0.803 |
|
| 2023 |
Varland S, Silva RD, Kjosås I, Faustino A, Bogaert A, Billmann M, Boukhatmi H, Kellen B, Costanzo M, Drazic A, Osberg C, Chan K, Zhang X, Tong AHY, Andreazza S, ... ... Myers CL, et al. N-terminal acetylation shields proteins from degradation and promotes age-dependent motility and longevity. Nature Communications. 14: 6774. PMID 37891180 DOI: 10.1038/s41467-023-42342-y |
0.739 |
|
| 2023 |
Hassan AZ, Ward HN, Rahman M, Billmann M, Lee Y, Myers CL. Dimensionality reduction methods for extracting functional networks from large-scale CRISPR screens. Molecular Systems Biology. e11657. PMID 37750448 DOI: 10.15252/msb.202311657 |
0.807 |
|
| 2023 |
Chang YC, Lin K, Baxley RM, Durrett W, Wang L, Stojkova O, Billmann M, Ward H, Myers CL, Bielinsky AK. RNF4 and USP7 cooperate in ubiquitin-regulated steps of DNA replication. Open Biology. 13: 230068. PMID 37607592 DOI: 10.1098/rsob.230068 |
0.789 |
|
| 2023 |
Billmann M, Ward HN, Aregger M, Costanzo M, Andrews BJ, Boone C, Moffat J, Myers CL. Reproducibility metrics for context-specific CRISPR screens. Cell Systems. 14: 418-422.e2. PMID 37201508 DOI: 10.1016/j.cels.2023.04.003 |
0.805 |
|
| 2023 |
Antony ML, Chang D, Noble-Orcutt KE, Kay A, Jensen JL, Mohei H, Myers CL, Sachs K, Sachs Z. CD69 marks a subpopulation of acute myeloid leukemia with enhanced colony forming capacity and a unique signaling activation state. Leukemia & Lymphoma. 1-13. PMID 37161853 DOI: 10.1080/10428194.2023.2207698 |
0.4 |
|
| 2023 |
Rogers CB, Kram RE, Lin K, Myers CL, Sobeck A, Hendrickson EA, Bielinsky AK. Fanconi anemia-associated chromosomal radial formation is dependent on POLθ-mediated alternative end joining. Cell Reports. 42: 112428. PMID 37086407 DOI: 10.1016/j.celrep.2023.112428 |
0.463 |
|
| 2023 |
Hassan AZ, Ward HN, Rahman M, Billmann M, Lee Y, Myers CL. Dimensionality reduction methods for extracting functional networks from large-scale CRISPR screens. Biorxiv : the Preprint Server For Biology. PMID 36993440 DOI: 10.1101/2023.02.22.529573 |
0.82 |
|
| 2023 |
Nanda S, Jacques MA, Wang W, Myers CL, Yilmaz LS, Walhout AJ. Systems-level transcriptional regulation of Caenorhabditis elegans metabolism. Molecular Systems Biology. e11443. PMID 36942755 DOI: 10.15252/msb.202211443 |
0.323 |
|
| 2023 |
Diers BW, Specht JE, Graef GL, Song Q, Rainey KM, Ramasubramanian V, Liu X, Myers CL, Stupar RM, An YC, Beavis WD. Genetic architecture of protein and oil content in soybean seed and meal. The Plant Genome. e20308. PMID 36744727 DOI: 10.1002/tpg2.20308 |
0.538 |
|
| 2022 |
Chan K, Farias AG, Lee H, Guvenc F, Mero P, Brown KR, Ward H, Billmann M, Aulakh K, Astori A, Haider S, Marcon E, Braunschweig U, Pu S, Habsid A, ... ... Myers C, et al. Survival-based CRISPR genetic screens across a panel of permissive cell lines identify common and cell-specific SARS-CoV-2 host factors. Heliyon. e12744. PMID 36597481 DOI: 10.1016/j.heliyon.2022.e12744 |
0.799 |
|
| 2022 |
Magtanong L, Mueller GD, Williams KJ, Billmann M, Chan K, Armenta DA, Pope LE, Moffat J, Boone C, Myers CL, Olzmann JA, Bensinger SJ, Dixon SJ. Context-dependent regulation of ferroptosis sensitivity. Cell Chemical Biology. 29: 1568. PMID 36270234 DOI: 10.1016/j.chembiol.2022.08.008 |
0.69 |
|
| 2022 |
Lin K, Chang YC, Marron Fernandez de Velasco E, Wickman K, Myers CL, Bielinsky AK. Scalable CRISPR-Cas9 chemical genetic screens in non-transformed human cells. Star Protocols. 3: 101675. PMID 36107744 DOI: 10.1016/j.xpro.2022.101675 |
0.553 |
|
| 2022 |
Conti MM, Ghizzoni JM, Gil-Bona A, Wang W, Costanzo M, Li R, Flynn MJ, Zhu LJ, Myers CL, Boone C, Andrews BJ, Benanti JA. Repression of essential cell cycle genes increases cellular fitness. Plos Genetics. 18: e1010349. PMID 36037231 DOI: 10.1371/journal.pgen.1010349 |
0.38 |
|
| 2022 |
Magtanong L, Mueller GD, Williams KJ, Billmann M, Chan K, Armenta DA, Moffat J, Boone C, Myers CL, Olzmann JA, Bensinger SJ, Dixon SJ. Context-dependent regulation of ferroptosis sensitivity. Cell Chemical Biology. PMID 35809566 DOI: 10.1016/j.chembiol.2022.06.004 |
0.75 |
|
| 2022 |
Hallacli E, Kayatekin C, Nazeen S, Wang XH, Sheinkopf Z, Sathyakumar S, Sarkar S, Jiang X, Dong X, Di Maio R, Wang W, Keeney MT, Felsky D, Sandoe J, Vahdatshoar A, ... ... Myers CL, et al. The Parkinson's disease protein alpha-synuclein is a modulator of processing bodies and mRNA stability. Cell. 185: 2035-2056.e33. PMID 35688132 DOI: 10.1016/j.cell.2022.05.008 |
0.306 |
|
| 2021 |
Fu C, Zhang X, Veri AO, Iyer KR, Lash E, Xue A, Yan H, Revie NM, Wong C, Lin ZY, Polvi EJ, Liston SD, VanderSluis B, Hou J, Yashiroda Y, ... ... Myers CL, et al. Leveraging machine learning essentiality predictions and chemogenomic interactions to identify antifungal targets. Nature Communications. 12: 6497. PMID 34764269 DOI: 10.1038/s41467-021-26850-3 |
0.782 |
|
| 2021 |
Ward HN, Aregger M, Gonatopoulos-Pournatzis T, Billmann M, Ohsumi TK, Brown KR, Blencowe BJ, Moffat J, Myers CL. Analysis of combinatorial CRISPR screens with the Orthrus scoring pipeline. Nature Protocols. PMID 34508259 DOI: 10.1038/s41596-021-00596-0 |
0.8 |
|
| 2021 |
Nudelman I, Kudrin D, Nudelman G, Deshpande R, Hartmann BM, Kleinstein SH, Myers CL, Sealfon SC, Zaslavsky E. Comparing Host Module Activation Patterns and Temporal Dynamics in Infection by Influenza H1N1 Viruses. Frontiers in Immunology. 12: 691758. PMID 34335598 DOI: 10.3389/fimmu.2021.691758 |
0.744 |
|
| 2021 |
Safizadeh H, Simpkins SW, Nelson J, Li SC, Piotrowski JS, Yoshimura M, Yashiroda Y, Hirano H, Osada H, Yoshida M, Boone C, Myers CL. Improving Measures of Chemical Structural Similarity Using Machine Learning on Chemical-Genetic Interactions. Journal of Chemical Information and Modeling. PMID 34318674 DOI: 10.1021/acs.jcim.0c00993 |
0.805 |
|
| 2021 |
Rahman M, Billmann M, Costanzo M, Aregger M, Tong AHY, Chan K, Ward HN, Brown KR, Andrews BJ, Boone C, Moffat J, Myers CL. A method for benchmarking genetic screens reveals a predominant mitochondrial bias. Molecular Systems Biology. 17: e10013. PMID 34018332 DOI: 10.15252/msb.202010013 |
0.828 |
|
| 2021 |
Henningsen EC, Omidvar V, Della Coletta R, Michno JM, Gilbert E, Li F, Miller ME, Myers CL, Gordon SP, Vogel JP, Steffenson BJ, Kianian SF, Hirsch CD, Figueroa M. Identification of Candidate Susceptibility Genes to f. sp. in Wheat. Frontiers in Plant Science. 12: 657796. PMID 33968112 DOI: 10.3389/fpls.2021.657796 |
0.773 |
|
| 2021 |
Costanzo M, Hou J, Messier V, Nelson J, Rahman M, VanderSluis B, Wang W, Pons C, Ross C, Ušaj M, San Luis BJ, Shuteriqi E, Koch EN, Aloy P, Myers CL, et al. Environmental robustness of the global yeast genetic interaction network. Science (New York, N.Y.). 372. PMID 33958448 DOI: 10.1126/science.abf8424 |
0.831 |
|
| 2021 |
Kuzmin E, Rahman M, VanderSluis B, Costanzo M, Myers CL, Andrews BJ, Boone C. τ-SGA: synthetic genetic array analysis for systematically screening and quantifying trigenic interactions in yeast. Nature Protocols. PMID 33462440 DOI: 10.1038/s41596-020-00456-3 |
0.825 |
|
| 2020 |
van Leeuwen J, Pons C, Tan G, Wang JZ, Hou J, Weile J, Gebbia M, Liang W, Shuteriqi E, Li Z, Lopes M, Ušaj M, Dos Santos Lopes A, van Lieshout N, Myers CL, et al. Systematic analysis of bypass suppression of essential genes. Molecular Systems Biology. 16: e9828. PMID 32939983 DOI: 10.15252/Msb.20209828 |
0.725 |
|
| 2020 |
Aregger M, Lawson KA, Billmann M, Costanzo M, Tong AHY, Chan K, Rahman M, Brown KR, Ross C, Usaj M, Nedyalkova L, Sizova O, Habsid A, Pawling J, Lin ZY, ... ... Myers CL, et al. Systematic mapping of genetic interactions for de novo fatty acid synthesis identifies C12orf49 as a regulator of lipid metabolism. Nature Metabolism. 2: 499-513. PMID 32694731 DOI: 10.1038/s42255-020-0211-z |
0.647 |
|
| 2020 |
Kuzmin E, VanderSluis B, Nguyen Ba AN, Wang W, Koch EN, Usaj M, Khmelinskii A, Usaj MM, van Leeuwen J, Kraus O, Tresenrider A, Pryszlak M, Hu MC, Varriano B, Costanzo M, ... ... Myers CL, et al. Exploring whole-genome duplicate gene retention with complex genetic interaction analysis. Science (New York, N.Y.). 368. PMID 32586993 DOI: 10.1126/Science.Aaz5667 |
0.836 |
|
| 2020 |
Michno JM, Liu J, Jeffers JR, Stupar RM, Myers CL. Identification of nodulation-related genes in using genome-wide association studies and co-expression networks. Plant Direct. 4: e00220. PMID 32426691 DOI: 10.1002/pld3.220 |
0.807 |
|
| 2020 |
Gonatopoulos-Pournatzis T, Aregger M, Brown KR, Farhangmehr S, Braunschweig U, Ward HN, Ha KCH, Weiss A, Billmann M, Durbic T, Myers CL, Blencowe BJ, Moffat J. Genetic interaction mapping and exon-resolution functional genomics with a hybrid Cas9-Cas12a platform. Nature Biotechnology. PMID 32249828 DOI: 10.1038/S41587-020-0437-Z |
0.84 |
|
| 2020 |
Stroik S, Kurtz K, Lin K, Karachenets S, Myers CL, Bielinsky AK, Hendrickson EA. EXO1 resection at G-quadruplex structures facilitates resolution and replication. Nucleic Acids Research. PMID 32232411 DOI: 10.1093/nar/gkaa199 |
0.447 |
|
| 2020 |
Zhou FL, Li SC, Zhu Y, Guo WJ, Shao LJ, Nelson J, Simpkins S, Yang DH, Liu Q, Yashiroda Y, Xu JB, Fan YY, Yue JM, Yoshida M, Xia T, ... Myers CL, et al. Publisher Correction: Integrating yeast chemical genomics and mammalian cell pathway analysis. Acta Pharmacologica Sinica. PMID 32081979 DOI: 10.1038/S41401-019-0355-0 |
0.797 |
|
| 2019 |
Sachs K, Sarver AL, Noble-Orcutt KE, LaRue RS, Antony ML, Chang D, Lee Y, Navis CM, Hillesheim AL, Nykaza IR, Ha NA, Hansen CJ, Karadag FK, Bergerson RJ, Verneris MR, ... ... Myers CL, et al. Single-cell gene expression analyses reveal distinct self-renewing and proliferating subsets in the leukemia stem cell compartment in acute myeloid leukemia. Cancer Research. PMID 31784425 DOI: 10.1158/0008-5472.Can-18-2932 |
0.783 |
|
| 2019 |
Chen D, Xu W, Wang Y, Ye Y, Wang Y, Yu M, Gao J, Wei J, Dong Y, Zhang H, Fu X, Ma K, Wang H, Yang Z, Zhou J, ... ... Myers CL, et al. Revealing Functional Crosstalk between Distinct Bioprocesses through Reciprocal Functional Tests of Genetically Interacting Genes. Cell Reports. 29: 2646-2658.e5. PMID 31775035 DOI: 10.1016/J.Celrep.2019.10.076 |
0.544 |
|
| 2019 |
Fang G, Wang W, Paunic V, Heydari H, Costanzo M, Liu X, Liu X, VanderSluis B, Oately B, Steinbach M, Van Ness B, Schadt EE, Pankratz ND, Boone C, Kumar V, ... Myers CL, et al. Discovering genetic interactions bridging pathways in genome-wide association studies. Nature Communications. 10: 4274. PMID 31537791 DOI: 10.1038/S41467-019-12131-7 |
0.844 |
|
| 2019 |
Zhou FL, Li SC, Zhu Y, Guo WJ, Shao LJ, Nelson J, Simpkins S, Yang DH, Liu Q, Yashiroda Y, Xu JB, Fan YY, Yue JM, Yoshida M, Xia T, ... Myers CL, et al. Integrating yeast chemical genomics and mammalian cell pathway analysis. Acta Pharmacologica Sinica. PMID 31138898 DOI: 10.1038/S41401-019-0231-Y |
0.813 |
|
| 2019 |
Simpkins SW, Deshpande R, Nelson J, Li SC, Piotrowski JS, Ward HN, Yashiroda Y, Osada H, Yoshida M, Boone C, Myers CL. Using BEAN-counter to quantify genetic interactions from multiplexed barcode sequencing experiments. Nature Protocols. PMID 30635653 DOI: 10.1038/S41596-018-0099-1 |
0.825 |
|
| 2018 |
Schaefer R, Michno JM, Jeffers J, Hoekenga OA, Dilkes BP, Baxter IR, Myers C. Integrating co-expression networks with GWAS to prioritize causal genes in maize. The Plant Cell. PMID 30413654 DOI: 10.1105/Tpc.18.00299 |
0.806 |
|
| 2018 |
Simpkins SW, Nelson J, Deshpande R, Li SC, Piotrowski JS, Wilson EH, Gebre AA, Safizadeh H, Okamoto R, Yoshimura M, Costanzo M, Yashiroda Y, Ohya Y, Osada H, Yoshida M, ... ... Myers CL, et al. Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interactions. Plos Computational Biology. 14: e1006532. PMID 30376562 DOI: 10.1371/Journal.Pcbi.1006532 |
0.832 |
|
| 2018 |
VanderSluis B, Costanzo M, Billmann M, Ward HN, Myers CL, Andrews BJ, Boone C. Integrating genetic and protein-protein interaction networks maps a functional wiring diagram of a cell. Current Opinion in Microbiology. 45: 170-179. PMID 30059827 DOI: 10.1016/J.Mib.2018.06.004 |
0.83 |
|
| 2018 |
Ciftci-Yilmaz S, Au WC, Mishra PK, Eisenstatt JR, Chang J, Dawson AR, Zhu I, Rahman M, Bilke S, Costanzo M, Baryshnikova A, Myers CL, Meltzer PS, Landsman D, Baker RE, et al. A Genome-Wide Screen Reveals a Role for the HIR Histone Chaperone Complex in Preventing Mislocalization of Budding Yeast CENP-A. Genetics. PMID 30012561 DOI: 10.1534/Genetics.118.301305 |
0.648 |
|
| 2018 |
Kuzmin E, VanderSluis B, Wang W, Tan G, Deshpande R, Chen Y, Usaj M, Balint A, Mattiazzi Usaj M, van Leeuwen J, Koch EN, Pons C, Dagilis AJ, Pryszlak M, Wang JZY, ... ... Myers CL, et al. Systematic analysis of complex genetic interactions. Science (New York, N.Y.). 360. PMID 29674565 DOI: 10.1126/Science.Aao1729 |
0.83 |
|
| 2018 |
Kayatekin C, Amasino A, Gaglia G, Flannick J, Bonner JM, Fanning S, Narayan P, Barrasa MI, Pincus D, Landgraf D, Nelson J, Hesse WR, Costanzo M, Myers CL, et al. Translocon Declogger Ste24 Protects against IAPP Oligomer-Induced Proteotoxicity. Cell. PMID 29526462 DOI: 10.1016/J.Cell.2018.02.026 |
0.675 |
|
| 2018 |
Lu Y, Truman W, Liu X, Bethke G, Zhou M, Myers C, Katagiri F, Glazebrook J. Different modes of negative regulation of plant immunity by calmodulin-related genes. Plant Physiology. PMID 29449432 DOI: 10.1104/Pp.17.01209 |
0.509 |
|
| 2017 |
Nelson J, Simpkins SW, Safizadeh H, Li SC, Piotrowski JS, Hirano H, Yashiroda Y, Osada H, Yoshida M, Boone C, Myers CL. MOSAIC: a chemical-genetic interaction data repository and web resource for exploring chemical modes of action. Bioinformatics (Oxford, England). PMID 29206899 DOI: 10.1093/Bioinformatics/Btx732 |
0.832 |
|
| 2017 |
Piotrowski JS, Li SC, Deshpande R, Simpkins SW, Nelson J, Yashiroda Y, Barber JM, Safizadeh H, Wilson E, Okada H, Gebre AA, Kubo K, Torres NP, LeBlanc MA, Andrusiak K, ... ... Myers CL, et al. Errata: Functional annotation of chemical libraries across diverse biological processes. Nature Chemical Biology. 13: 1286. PMID 29161247 DOI: 10.1038/nchembio1217-1286a |
0.779 |
|
| 2017 |
Piotrowski JS, Li SC, Deshpande R, Simpkins SW, Nelson J, Yashiroda Y, Barber JM, Safizadeh H, Wilson E, Okada H, Gebre AA, Kubo K, Torres NP, LeBlanc MA, Andrusiak K, ... ... Myers CL, et al. Errata: Functional annotation of chemical libraries across diverse biological processes. Nature Chemical Biology. 13: 1286. PMID 29161244 DOI: 10.1038/nchembio1217-1286b |
0.779 |
|
| 2017 |
Adnani N, Chevrette M, Adibhatla SN, Zhang F, Yu Q, Braun DR, Nelson J, Simpkins SW, McDonald BR, Myers CL, Piotrowski JS, Thompson CJ, Currie CR, Li L, Rajski SR, et al. Co-culture of Marine Invertebrate-Associated Bacteria and Interdisciplinary Technologies Enable Biosynthesis and Discovery of a New Antibiotic, Keyicin. Acs Chemical Biology. PMID 29121465 DOI: 10.1021/Acschembio.7B00688 |
0.789 |
|
| 2017 |
Wang W, Xu ZZ, Costanzo M, Boone C, Lange CA, Myers CL. Pathway-based discovery of genetic interactions in breast cancer. Plos Genetics. 13: e1006973. PMID 28957314 DOI: 10.1371/Journal.Pgen.1006973 |
0.412 |
|
| 2017 |
Rizzolo K, Huen J, Kumar A, Phanse S, Vlasblom J, Kakihara Y, Zeineddine HA, Minic Z, Snider J, Wang W, Pons C, Seraphim TV, Boczek EE, Alberti S, Costanzo M, ... Myers CL, et al. Features of the Chaperone Cellular Network Revealed through Systematic Interaction Mapping. Cell Reports. 20: 2735-2748. PMID 28903051 DOI: 10.1016/J.Celrep.2017.08.074 |
0.728 |
|
| 2017 |
Piotrowski JS, Li SC, Deshpande R, Simpkins SW, Nelson J, Yashiroda Y, Barber JM, Safizadeh H, Wilson E, Okada H, Gebre AA, Kubo K, Torres NP, LeBlanc MA, Andrusiak K, ... ... Myers CL, et al. Functional annotation of chemical libraries across diverse biological processes. Nature Chemical Biology. PMID 28759014 DOI: 10.1038/Nchembio.2436 |
0.823 |
|
| 2017 |
Wyche TP, Alvarenga RFR, Piotrowski JS, Duster MN, Warrack SR, Cornilescu G, De Wolfe TJ, Hou Y, Braun DR, Ellis GA, Simpkins SW, Nelson J, Myers CL, Steele J, Mori H, et al. Chemical Genomics, Structure Elucidation, and In Vivo Studies of the Marine-derived Anticlostridial Ecteinamycin. Acs Chemical Biology. PMID 28708379 DOI: 10.1021/Acschembio.7B00388 |
0.789 |
|
| 2017 |
Hart T, Tong AHY, Chan K, Van Leeuwen J, Seetharaman A, Aregger M, Chandrashekhar M, Hustedt N, Seth S, Noonan A, Habsid A, Sizova O, Nedyalkova L, Climie R, Tworzyanski L, ... ... Myers CL, et al. Evaluation and Design of Genome-Wide CRISPR/SpCas9 Knockout Screens. G3 (Bethesda, Md.). PMID 28655737 DOI: 10.1534/G3.117.041277 |
0.823 |
|
| 2017 |
Morales EH, Pinto CA, Luraschi R, Muñoz-Villagrán CM, Cornejo FA, Simpkins SW, Nelson J, Arenas FA, Piotrowski JS, Myers CL, Mori H, Vásquez CC. Accumulation of heme biosynthetic intermediates contributes to the antibacterial action of the metalloid tellurite. Nature Communications. 8: 15320. PMID 28492282 DOI: 10.1038/Ncomms15320 |
0.769 |
|
| 2017 |
Davison JR, Lohith KM, Wang X, Bobyk K, Mandadapu SR, Lee SL, Cencic R, Nelson J, Simpkins S, Frank KM, Pelletier J, Myers CL, Piotrowski J, Smith HE, Bewley CA. A New Natural Product Analog of Blasticidin S Reveals Cellular Uptake Facilitated by the NorA Multidrug Transporter. Antimicrobial Agents and Chemotherapy. PMID 28373194 DOI: 10.1128/Aac.02635-16 |
0.782 |
|
| 2017 |
Usaj M, Tan Y, Wang W, VanderSluis B, Zou A, Myers CL, Costanzo M, Andrews B, Boone C. TheCellMap.org: A Web-Accessible Database for Visualizing and Mining the Global Yeast Genetic Interaction Network. G3 (Bethesda, Md.). PMID 28325812 DOI: 10.1534/G3.117.040220 |
0.807 |
|
| 2016 |
Li L, Briskine R, Schaefer R, Schnable PS, Myers CL, Flagel LE, Springer NM, Muehlbauer GJ. Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias. Bmc Genomics. 17: 875. PMID 27814670 DOI: 10.1186/S12864-016-3194-0 |
0.77 |
|
| 2016 |
van Leeuwen J, Pons C, Mellor JC, Yamaguchi TN, Friesen H, Koschwanez J, Ušaj MM, Pechlaner M, Takar M, Ušaj M, VanderSluis B, Andrusiak K, Bansal P, Baryshnikova A, Boone CE, ... ... Myers CL, et al. Exploring genetic suppression interactions on a global scale. Science (New York, N.Y.). 354. PMID 27811238 DOI: 10.1126/Science.Aag0839 |
0.836 |
|
| 2016 |
Fuxman Bass JI, Pons C, Kozlowski L, Reece-Hoyes JS, Shrestha S, Holdorf AD, Mori A, Myers CL, Walhout AJ. A gene-centered C. elegans protein-DNA interaction network provides a framework for functional predictions. Molecular Systems Biology. 12: 884. PMID 27777270 DOI: 10.15252/msb.20167131 |
0.721 |
|
| 2016 |
Costanzo M, VanderSluis B, Koch EN, Baryshnikova A, Pons C, Tan G, Wang W, Usaj M, Hanchard J, Lee SD, Pelechano V, Styles EB, Billmann M, van Leeuwen J, van Dyk N, ... ... Myers CL, et al. A global genetic interaction network maps a wiring diagram of cellular function. Science (New York, N.Y.). 353. PMID 27708008 DOI: 10.1126/Science.Aaf1420 |
0.821 |
|
| 2016 |
Styles EB, Founk KJ, Zamparo LA, Sing TL, Altintas D, Ribeyre C, Ribaud V, Rougemont J, Mayhew D, Costanzo M, Usaj M, Verster AJ, Koch EN, Novarina D, Graf M, ... ... Myers CL, et al. Exploring Quantitative Yeast Phenomics with Single-Cell Analysis of DNA Damage Foci. Cell Systems. PMID 27617677 DOI: 10.1016/J.Cels.2016.08.008 |
0.755 |
|
| 2016 |
Schaefer RJ, Michno JM, Myers CL. Unraveling gene function in agricultural species using gene co-expression networks. Biochimica Et Biophysica Acta. PMID 27485388 DOI: 10.1016/j.bbagrm.2016.07.016 |
0.776 |
|
| 2015 |
Becker JR, Pons C, Nguyen HD, Costanzo M, Boone C, Myers CL, Bielinsky AK. Genetic Interactions Implicating Postreplicative Repair in Okazaki Fragment Processing. Plos Genetics. 11: e1005659. PMID 26545110 DOI: 10.1371/Journal.Pgen.1005659 |
0.648 |
|
| 2015 |
MacNeil LT, Pons C, Arda HE, Giese GE, Myers CL, Walhout AJ. Transcription Factor Activity Mapping of a Tissue-Specific in vivo Gene Regulatory Network. Cell Systems. 1: 152-162. PMID 26430702 DOI: 10.1016/j.cels.2015.08.003 |
0.689 |
|
| 2015 |
Piotrowski JS, Okada H, Lu F, Li SC, Hinchman L, Ranjan A, Smith DL, Higbee AJ, Ulbrich A, Coon JJ, Deshpande R, Bukhman YV, McIlwain S, Ong IM, Myers CL, et al. Plant-derived antifungal agent poacic acid targets β-1,3-glucan. Proceedings of the National Academy of Sciences of the United States of America. 112: E1490-7. PMID 25775513 DOI: 10.1073/Pnas.1410400112 |
0.74 |
|
| 2015 |
Piotrowski JS, Simpkins SW, Li SC, Deshpande R, McIlwain SJ, Ong IM, Myers CL, Boone C, Andersen RJ. Chemical genomic profiling via barcode sequencing to predict compound mode of action. Methods in Molecular Biology (Clifton, N.J.). 1263: 299-318. PMID 25618354 DOI: 10.1007/978-1-4939-2269-7_23 |
0.796 |
|
| 2014 |
Brown JC, Nelson J, VanderSluis B, Deshpande R, Butts A, Kagan S, Polacheck I, Krysan DJ, Myers CL, Madhani HD. Unraveling the biology of a fungal meningitis pathogen using chemical genetics. Cell. 159: 1168-87. PMID 25416953 DOI: 10.1016/J.Cell.2014.10.044 |
0.827 |
|
| 2014 |
Kuzmin E, Sharifpoor S, Baryshnikova A, Costanzo M, Myers CL, Andrews BJ, Boone C. Synthetic genetic array analysis for global mapping of genetic networks in yeast. Methods in Molecular Biology (Clifton, N.J.). 1205: 143-68. PMID 25213244 DOI: 10.1007/978-1-4939-1363-3_10 |
0.425 |
|
| 2014 |
Wyche TP, Piotrowski JS, Hou Y, Braun D, Deshpande R, McIlwain S, Ong IM, Myers CL, Guzei IA, Westler WM, Andes DR, Bugni TS. Forazoline A: marine-derived polyketide with antifungal in vivo efficacy. Angewandte Chemie (International Ed. in English). 53: 11583-6. PMID 25197007 DOI: 10.1002/Anie.201405990 |
0.728 |
|
| 2014 |
DiPrima S, Haarer B, Viggiano S, Pons C, Myers CL, Amberg DC. Linking genetics to structural biology: complex heterozygosity screening with actin alanine scan alleles identifies functionally related surfaces on yeast actin. G3 (Bethesda, Md.). 4: 1491-501. PMID 24938290 DOI: 10.1534/G3.114.012054 |
0.692 |
|
| 2014 |
Schaefer RJ, Briskine R, Springer NM, Myers CL. Discovering functional modules across diverse maize transcriptomes using COB, the Co-expression Browser. Plos One. 9: e99193. PMID 24922320 DOI: 10.1371/Journal.Pone.0099193 |
0.795 |
|
| 2014 |
VanderSluis B, Hess DC, Pesyna C, Krumholz EW, Syed T, Szappanos B, Nislow C, Papp B, Troyanskaya OG, Myers CL, Caudy AA. Broad metabolic sensitivity profiling of a prototrophic yeast deletion collection. Genome Biology. 15: R64. PMID 24721214 DOI: 10.1186/Gb-2014-15-4-R64 |
0.813 |
|
| 2014 |
Kim Y, Tsuda K, Igarashi D, Hillmer RA, Sakakibara H, Myers CL, Katagiri F. Mechanisms underlying robustness and tunability in a plant immune signaling network. Cell Host & Microbe. 15: 84-94. PMID 24439900 DOI: 10.1016/J.Chom.2013.12.002 |
0.786 |
|
| 2014 |
Fung SY, Sofiyev V, Schneiderman J, Hirschfeld AF, Victor RE, Woods K, Piotrowski JS, Deshpande R, Li SC, de Voogd NJ, Myers CL, Boone C, Andersen RJ, Turvey SE. Unbiased screening of marine sponge extracts for anti-inflammatory agents combined with chemical genomics identifies girolline as an inhibitor of protein synthesis. Acs Chemical Biology. 9: 247-57. PMID 24117378 DOI: 10.1021/Cb400740C |
0.737 |
|
| 2013 |
Fuxman Bass JI, Diallo A, Nelson J, Soto JM, Myers CL, Walhout AJ. Using networks to measure similarity between genes: association index selection. Nature Methods. 10: 1169-76. PMID 24296474 DOI: 10.1038/nmeth.2728 |
0.74 |
|
| 2013 |
Deshpande R, Asiedu MK, Klebig M, Sutor S, Kuzmin E, Nelson J, Piotrowski J, Shin SH, Yoshida M, Costanzo M, Boone C, Wigle DA, Myers CL. A comparative genomic approach for identifying synthetic lethal interactions in human cancer. Cancer Research. 73: 6128-36. PMID 23980094 DOI: 10.1158/0008-5472.Can-12-3956 |
0.817 |
|
| 2013 |
Baryshnikova A, VanderSluis B, Costanzo M, Myers CL, Cha RS, Andrews B, Boone C. Global linkage map connects meiotic centromere function to chromosome size in budding yeast. G3 (Bethesda, Md.). 3: 1741-51. PMID 23979930 DOI: 10.1534/G3.113.007377 |
0.738 |
|
| 2013 |
Eichten SR, Briskine R, Song J, Li Q, Swanson-Wagner R, Hermanson PJ, Waters AJ, Starr E, West PT, Tiffin P, Myers CL, Vaughn MW, Springer NM. Epigenetic and genetic influences on DNA methylation variation in maize populations. The Plant Cell. 25: 2783-97. PMID 23922207 DOI: 10.1105/Tpc.113.114793 |
0.736 |
|
| 2013 |
Deshpande R, Vandersluis B, Myers CL. Comparison of profile similarity measures for genetic interaction networks. Plos One. 8: e68664. PMID 23874711 DOI: 10.1371/journal.pone.0068664 |
0.824 |
|
| 2013 |
Nguyen HD, Becker J, Thu YM, Costanzo M, Koch EN, Smith S, Myung K, Myers CL, Boone C, Bielinsky AK. Unligated Okazaki Fragments Induce PCNA Ubiquitination and a Requirement for Rad59-Dependent Replication Fork Progression. Plos One. 8: e66379. PMID 23824283 DOI: 10.1371/Journal.Pone.0066379 |
0.715 |
|
| 2013 |
Baryshnikova A, Costanzo M, Myers CL, Andrews B, Boone C. Genetic interaction networks: toward an understanding of heritability. Annual Review of Genomics and Human Genetics. 14: 111-33. PMID 23808365 DOI: 10.1146/Annurev-Genom-082509-141730 |
0.408 |
|
| 2013 |
Reece-Hoyes JS, Pons C, Diallo A, Mori A, Shrestha S, Kadreppa S, Nelson J, Diprima S, Dricot A, Lajoie BR, Ribeiro PS, Weirauch MT, Hill DE, Hughes TR, Myers CL, et al. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Molecular Cell. 51: 116-27. PMID 23791784 DOI: 10.1016/j.molcel.2013.05.018 |
0.801 |
|
| 2013 |
Wagih O, Usaj M, Baryshnikova A, VanderSluis B, Kuzmin E, Costanzo M, Myers CL, Andrews BJ, Boone CM, Parts L. SGAtools: one-stop analysis and visualization of array-based genetic interaction screens. Nucleic Acids Research. 41: W591-6. PMID 23677617 DOI: 10.1093/nar/gkt400 |
0.804 |
|
| 2013 |
Sekhon RS, Briskine R, Hirsch CN, Myers CL, Springer NM, Buell CR, de Leon N, Kaeppler SM. Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays. Plos One. 8: e61005. PMID 23637782 DOI: 10.1371/Journal.Pone.0061005 |
0.735 |
|
| 2013 |
Colak R, Kim T, Michaut M, Sun M, Irimia M, Bellay J, Myers CL, Blencowe BJ, Kim PM. Distinct types of disorder in the human proteome: functional implications for alternative splicing. Plos Computational Biology. 9: e1003030. PMID 23633940 DOI: 10.1371/Journal.Pcbi.1003030 |
0.777 |
|
| 2013 |
Alver B, Jauert PA, Brosnan L, O'Hehir M, Vandersluis B, Myers CL, Kirkpatrick DT. A Whole Genome Screen for Minisatellite Stability Genes in Stationary Phase Yeast Cells. G3 (Bethesda, Md.). PMID 23550123 DOI: 10.1534/G3.112.005397 |
0.76 |
|
| 2013 |
Stessman HA, Baughn LB, Sarver A, Xia T, Deshpande R, Mansoor A, Walsh SA, Sunderland JJ, Dolloff NG, Linden MA, Zhan F, Janz S, Myers CL, Van Ness BG. Profiling bortezomib resistance identifies secondary therapies in a mouse myeloma model. Molecular Cancer Therapeutics. 12: 1140-50. PMID 23536725 DOI: 10.1158/1535-7163.Mct-12-1151 |
0.751 |
|
| 2013 |
Makarevitch I, Eichten SR, Briskine R, Waters AJ, Danilevskaya ON, Meeley RB, Myers CL, Vaughn MW, Springer NM. Genomic distribution of maize facultative heterochromatin marked by trimethylation of H3K27. The Plant Cell. 25: 780-93. PMID 23463775 DOI: 10.1105/Tpc.112.106427 |
0.761 |
|
| 2012 |
Swanson-Wagner R, Briskine R, Schaefer R, Hufford MB, Ross-Ibarra J, Myers CL, Tiffin P, Springer NM. Reshaping of the maize transcriptome by domestication. Proceedings of the National Academy of Sciences of the United States of America. 109: 11878-83. PMID 22753482 DOI: 10.1073/Pnas.1201961109 |
0.783 |
|
| 2012 |
Koch EN, Costanzo M, Bellay J, Deshpande R, Chatfield-Reed K, Chua G, D'Urso G, Andrews BJ, Boone C, Myers CL. Conserved rules govern genetic interaction degree across species. Genome Biology. 13: R57. PMID 22747640 DOI: 10.1186/Gb-2012-13-7-R57 |
0.831 |
|
| 2012 |
Sharifpoor S, van Dyk D, Costanzo M, Baryshnikova A, Friesen H, Douglas AC, Youn JY, VanderSluis B, Myers CL, Papp B, Boone C, Andrews BJ. Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs. Genome Research. 22: 791-801. PMID 22282571 DOI: 10.1101/Gr.129213.111 |
0.799 |
|
| 2012 |
Davidson MB, Katou Y, Keszthelyi A, Sing TL, Xia T, Ou J, Vaisica JA, Thevakumaran N, Marjavaara L, Myers CL, Chabes A, Shirahige K, Brown GW. Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype. The Embo Journal. 31: 895-907. PMID 22234187 DOI: 10.1038/Emboj.2011.485 |
0.429 |
|
| 2012 |
Bellay J, Michaut M, Kim T, Han S, Colak R, Myers CL, Kim PM. An omics perspective of protein disorder. Molecular Biosystems. 8: 185-93. PMID 22101230 DOI: 10.1039/C1Mb05235G |
0.788 |
|
| 2011 |
Adams DJ, Berger B, Harismendy O, Huttenhower C, Liu XS, Myers CL, Oshlack A, Rinn JL, Walhout AJ. Genomics in 2011: challenges and opportunities. Genome Biology. 12: 137. PMID 22204305 DOI: 10.1186/Gb-2011-12-12-137 |
0.434 |
|
| 2011 |
Reece-Hoyes JS, Diallo A, Lajoie B, Kent A, Shrestha S, Kadreppa S, Pesyna C, Dekker J, Myers CL, Walhout AJ. Enhanced yeast one-hybrid assays for high-throughput gene-centered regulatory network mapping. Nature Methods. 8: 1059-64. PMID 22037705 DOI: 10.1038/Nmeth.1748 |
0.327 |
|
| 2011 |
Williams DE, Dalisay DS, Patrick BO, Matainaho T, Andrusiak K, Deshpande R, Myers CL, Piotrowski JS, Boone C, Yoshida M, Andersen RJ. Padanamides A and B, highly modified linear tetrapeptides produced in culture by a Streptomyces sp. isolated from a marine sediment. Organic Letters. 13: 3936-9. PMID 21749075 DOI: 10.1021/Ol2014494 |
0.722 |
|
| 2011 |
Bellay J, Atluri G, Sing TL, Toufighi K, Costanzo M, Ribeiro PS, Pandey G, Baller J, VanderSluis B, Michaut M, Han S, Kim P, Brown GW, Andrews BJ, Boone C, ... ... Myers CL, et al. Putting genetic interactions in context through a global modular decomposition. Genome Research. 21: 1375-87. PMID 21715556 DOI: 10.1101/Gr.117176.110 |
0.837 |
|
| 2011 |
Szappanos B, Kovács K, Szamecz B, Honti F, Costanzo M, Baryshnikova A, Gelius-Dietrich G, Lercher MJ, Jelasity M, Myers CL, Andrews BJ, Boone C, Oliver SG, Pál C, Papp B. An integrated approach to characterize genetic interaction networks in yeast metabolism. Nature Genetics. 43: 656-62. PMID 21623372 DOI: 10.1038/Ng.846 |
0.373 |
|
| 2011 |
Li Z, Vizeacoumar FJ, Bahr S, Li J, Warringer J, Vizeacoumar FS, Min R, Vandersluis B, Bellay J, Devit M, Fleming JA, Stephens A, Haase J, Lin ZY, Baryshnikova A, ... ... Myers CL, et al. Systematic exploration of essential yeast gene function with temperature-sensitive mutants. Nature Biotechnology. 29: 361-7. PMID 21441928 DOI: 10.1038/Nbt.1832 |
0.827 |
|
| 2011 |
Michaut M, Baryshnikova A, Costanzo M, Myers CL, Andrews BJ, Boone C, Bader GD. Protein complexes are central in the yeast genetic landscape. Plos Computational Biology. 7: e1001092. PMID 21390331 DOI: 10.1371/Journal.Pcbi.1001092 |
0.395 |
|
| 2011 |
Bellay J, Han S, Michaut M, Kim T, Costanzo M, Andrews BJ, Boone C, Bader GD, Myers CL, Kim PM. Bringing order to protein disorder through comparative genomics and genetic interactions. Genome Biology. 12: R14. PMID 21324131 DOI: 10.1186/Gb-2011-12-2-R14 |
0.78 |
|
| 2011 |
Costanzo M, Baryshnikova A, Myers CL, Andrews B, Boone C. Charting the genetic interaction map of a cell. Current Opinion in Biotechnology. 22: 66-74. PMID 21111604 DOI: 10.1016/J.Copbio.2010.11.001 |
0.452 |
|
| 2010 |
Deshpande R, Sharma S, Verfaillie CM, Hu WS, Myers CL. A scalable approach for discovering conserved active subnetworks across species. Plos Computational Biology. 6: e1001028. PMID 21170309 DOI: 10.1371/Journal.Pcbi.1001028 |
0.775 |
|
| 2010 |
VanderSluis B, Bellay J, Musso G, Costanzo M, Papp B, Vizeacoumar FJ, Baryshnikova A, Andrews B, Boone C, Myers CL. Genetic interactions reveal the evolutionary trajectories of duplicate genes. Molecular Systems Biology. 6: 429. PMID 21081923 DOI: 10.1038/Msb.2010.82 |
0.843 |
|
| 2010 |
Baryshnikova A, Costanzo M, Kim Y, Ding H, Koh J, Toufighi K, Youn JY, Ou J, San Luis BJ, Bandyopadhyay S, Hibbs M, Hess D, Gingras AC, Bader GD, Troyanskaya OG, ... ... Myers CL, et al. Quantitative analysis of fitness and genetic interactions in yeast on a genome scale. Nature Methods. 7: 1017-24. PMID 21076421 DOI: 10.1038/Nmeth.1534 |
0.842 |
|
| 2010 |
Baryshnikova A, Costanzo M, Dixon S, Vizeacoumar FJ, Myers CL, Andrews B, Boone C. Synthetic genetic array (SGA) analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe. Methods in Enzymology. 470: 145-79. PMID 20946810 DOI: 10.1016/S0076-6879(10)70007-0 |
0.444 |
|
| 2010 |
Pandey G, Zhang B, Chang AN, Myers CL, Zhu J, Kumar V, Schadt EE. An integrative multi-network and multi-classifier approach to predict genetic interactions. Plos Computational Biology. 6. PMID 20838583 DOI: 10.1371/Journal.Pcbi.1000928 |
0.399 |
|
| 2010 |
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, ... ... Myers CL, et al. The genetic landscape of a cell. Science (New York, N.Y.). 327: 425-31. PMID 20093466 DOI: 10.1126/Science.1180823 |
0.835 |
|
| 2010 |
Koh JL, Ding H, Costanzo M, Baryshnikova A, Toufighi K, Bader GD, Myers CL, Andrews BJ, Boone C. DRYGIN: a database of quantitative genetic interaction networks in yeast. Nucleic Acids Research. 38: D502-7. PMID 19880385 DOI: 10.1093/Nar/Gkp820 |
0.423 |
|
| 2009 |
Myers CL, Chiriac C, Troyanskaya OG. Discovering biological networks from diverse functional genomic data. Methods in Molecular Biology (Clifton, N.J.). 563: 157-75. PMID 19597785 DOI: 10.1007/978-1-60761-175-2_9 |
0.623 |
|
| 2009 |
Huttenhower C, Hibbs MA, Myers CL, Caudy AA, Hess DC, Troyanskaya OG. The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction. Bioinformatics (Oxford, England). 25: 2404-10. PMID 19561015 DOI: 10.1093/Bioinformatics/Btp397 |
0.8 |
|
| 2009 |
Huttenhower C, Myers CL, Hibbs MA, Troyanskaya OG. Computational analysis of the yeast proteome: understanding and exploiting functional specificity in genomic data. Methods in Molecular Biology (Clifton, N.J.). 548: 273-93. PMID 19521830 DOI: 10.1007/978-1-59745-540-4_15 |
0.804 |
|
| 2009 |
Hibbs MA, Myers CL, Huttenhower C, Hess DC, Li K, Caudy AA, Troyanskaya OG. Directing experimental biology: a case study in mitochondrial biogenesis. Plos Computational Biology. 5: e1000322. PMID 19300515 DOI: 10.1371/Journal.Pcbi.1000322 |
0.82 |
|
| 2009 |
Hess DC, Myers CL, Huttenhower C, Hibbs MA, Hayes AP, Paw J, Clore JJ, Mendoza RM, Luis BS, Nislow C, Giaever G, Costanzo M, Troyanskaya OG, Caudy AA. Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis. Plos Genetics. 5: e1000407. PMID 19300474 DOI: 10.1371/Journal.Pgen.1000407 |
0.804 |
|
| 2008 |
Dixon SJ, Fedyshyn Y, Koh JL, Prasad TS, Chahwan C, Chua G, Toufighi K, Baryshnikova A, Hayles J, Hoe KL, Kim DU, Park HO, Myers CL, Pandey A, Durocher D, et al. Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. 105: 16653-8. PMID 18931302 DOI: 10.1073/Pnas.0806261105 |
0.385 |
|
| 2008 |
Guan Y, Myers CL, Lu R, Lemischka IR, Bult CJ, Troyanskaya OG. A genomewide functional network for the laboratory mouse. Plos Computational Biology. 4: e1000165. PMID 18818725 DOI: 10.1371/Journal.Pcbi.1000165 |
0.72 |
|
| 2008 |
Guan Y, Myers CL, Hess DC, Barutcuoglu Z, Caudy AA, Troyanskaya OG. Predicting gene function in a hierarchical context with an ensemble of classifiers. Genome Biology. 9: S3. PMID 18613947 DOI: 10.1186/Gb-2008-9-S1-S3 |
0.676 |
|
| 2008 |
Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, et al. A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biology. 9: S2. PMID 18613946 DOI: 10.1186/Gb-2008-9-S1-S2 |
0.681 |
|
| 2007 |
Hibbs MA, Hess DC, Myers CL, Huttenhower C, Li K, Troyanskaya OG. Exploring the functional landscape of gene expression: directed search of large microarray compendia. Bioinformatics (Oxford, England). 23: 2692-9. PMID 17724061 DOI: 10.1093/Bioinformatics/Btm403 |
0.811 |
|
| 2007 |
Huttenhower C, Flamholz AI, Landis JN, Sahi S, Myers CL, Olszewski KL, Hibbs MA, Siemers NO, Troyanskaya OG, Coller HA. Nearest Neighbor Networks: clustering expression data based on gene neighborhoods. Bmc Bioinformatics. 8: 250. PMID 17626636 DOI: 10.1186/1471-2105-8-250 |
0.797 |
|
| 2007 |
Myers CL, Troyanskaya OG. Context-sensitive data integration and prediction of biological networks. Bioinformatics (Oxford, England). 23: 2322-30. PMID 17599939 DOI: 10.1093/Bioinformatics/Btm332 |
0.584 |
|
| 2006 |
Sealfon RS, Hibbs MA, Huttenhower C, Myers CL, Troyanskaya OG. GOLEM: an interactive graph-based gene-ontology navigation and analysis tool. Bmc Bioinformatics. 7: 443. PMID 17032457 DOI: 10.1186/1471-2105-7-443 |
0.81 |
|
| 2006 |
Huttenhower C, Hibbs M, Myers C, Troyanskaya OG. A scalable method for integration and functional analysis of multiple microarray datasets. Bioinformatics (Oxford, England). 22: 2890-7. PMID 17005538 DOI: 10.1093/Bioinformatics/Btl492 |
0.686 |
|
| 2006 |
Myers CL, Barrett DR, Hibbs MA, Huttenhower C, Troyanskaya OG. Finding function: evaluation methods for functional genomic data. Bmc Genomics. 7: 187. PMID 16869964 DOI: 10.1186/1471-2164-7-187 |
0.797 |
|
| 2006 |
Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, Myers CL, Parsons A, Friesen H, Oughtred R, Tong A, Stark C, Ho Y, Botstein D, Andrews B, Boone C, et al. Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae. Journal of Biology. 5: 11. PMID 16762047 DOI: 10.1186/Jbiol36 |
0.574 |
|
| 2006 |
Brown JA, Sherlock G, Myers CL, Burrows NM, Deng C, Wu HI, McCann KE, Troyanskaya OG, Brown JM. Global analysis of gene function in yeast by quantitative phenotypic profiling. Molecular Systems Biology. 2: 2006.0001. PMID 16738548 DOI: 10.1038/Msb4100043 |
0.588 |
|
| 2005 |
Myers CL, Robson D, Wible A, Hibbs MA, Chiriac C, Theesfeld CL, Dolinski K, Troyanskaya OG. Discovery of biological networks from diverse functional genomic data. Genome Biology. 6: R114. PMID 16420673 DOI: 10.1186/Gb-2005-6-13-R114 |
0.797 |
|
| 2005 |
Myers CL, Chen X, Troyanskaya OG. Visualization-based discovery and analysis of genomic aberrations in microarray data. Bmc Bioinformatics. 6: 146. PMID 15953389 DOI: 10.1186/1471-2105-6-146 |
0.547 |
|
| 2004 |
Myers CL, Dunham MJ, Kung SY, Troyanskaya OG. Accurate detection of aneuploidies in array CGH and gene expression microarray data. Bioinformatics (Oxford, England). 20: 3533-43. PMID 15284100 DOI: 10.1093/Bioinformatics/Bth440 |
0.562 |
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