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C Joel McManus, Ph.D. - Publications

Affiliations: 
2014- Biological Sciences Carnegie Mellon University, Pittsburgh, PA 
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 May GE, McManus CJ. Multiplexed Analysis of Human uORF Regulatory Functions During the ISR Using PoLib-Seq. Methods in Molecular Biology (Clifton, N.J.). 2428: 41-62. PMID 35171472 DOI: 10.1007/978-1-0716-1975-9_3  0.311
2021 Akirtava C, McManus CJ. Control of translation by eukaryotic mRNA transcript leaders-Insights from high-throughput assays and computational modeling. Wiley Interdisciplinary Reviews. Rna. 12: e1623. PMID 32869519 DOI: 10.1002/wrna.1623  0.339
2020 Lagree K, Woolford CA, Huang MY, May G, McManus CJ, Solis NV, Filler SG, Mitchell AP. Roles of Candida albicans Mig1 and Mig2 in glucose repression, pathogenicity traits, and SNF1 essentiality. Plos Genetics. 16: e1008582. PMID 31961865 DOI: 10.1371/Journal.Pgen.1008582  0.3
2019 Lin Y, May GE, Kready H, Nazzaro L, Mao M, Spealman P, Creeger Y, McManus CJ. Impacts of uORF codon identity and position on translation regulation. Nucleic Acids Research. PMID 31392980 DOI: 10.1093/Nar/Gkz681  0.39
2019 Huang MY, Woolford CA, May G, McManus CJ, Mitchell AP. Circuit diversification in a biofilm regulatory network. Plos Pathogens. 15: e1007787. PMID 31116789 DOI: 10.1371/Journal.Ppat.1007787  0.329
2019 Lee H, McManus CJ, Cho DY, Eaton M, Renda F, Somma MP, Cherbas L, May G, Powell S, Zhang D, Zhan L, Resch A, Andrews J, Celniker SE, Cherbas P, et al. Correction to: DNA copy number evolution in Drosophila cell lines. Genome Biology. 20: 53. PMID 30857560 DOI: 10.1186/S13059-019-1668-5  0.517
2019 Talkish J, May G, Lin Y, Woolford JL, Mcmanus CJ. Corrigendum: Mod-seq: high-throughput sequencing for chemical probing of RNA structure Rna. 25: 1226_1-1226_1. DOI: 10.1261/Rna.072405.119  0.352
2018 Coolon JD, McManus CJ, Stevenson KR, Graveley BR, Wittkopp PJ. Corrigendum: Tempo and mode of regulatory evolution in . Genome Research. 28: 1766. PMID 30385616 DOI: 10.1101/Gr.244087.118  0.513
2018 Lin Y, Schmidt BF, Bruchez MP, McManus CJ. Structural analyses of NEAT1 lncRNAs suggest long-range RNA interactions that may contribute to paraspeckle architecture. Nucleic Acids Research. PMID 29394378 DOI: 10.1093/Nar/Gky046  0.386
2018 Wang H, Kingsford C, McManus CJ. Using the Ribodeblur pipeline to recover A-sites from yeast ribosome profiling data. Methods (San Diego, Calif.). PMID 29330118 DOI: 10.1016/J.Ymeth.2018.01.002  0.34
2017 Klyczek KK, Bonilla JA, Jacobs-Sera D, Adair TL, Afram P, Allen KG, Archambault ML, Aziz RM, Bagnasco FG, Ball SL, Barrett NA, Benjamin RC, Blasi CJ, Borst K, Braun MA, ... ... McManus CJ, et al. Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages. Plos One. 12: e0180517. PMID 28715480 DOI: 10.1371/Journal.Pone.0180517  0.316
2016 Spealman P, Wang H, May G, Kingsford C, McManus CJ. Exploring Ribosome Positioning on Translating Transcripts with Ribosome Profiling. Methods in Molecular Biology (Clifton, N.J.). 1358: 71-97. PMID 26463378 DOI: 10.1007/978-1-4939-3067-8_5  0.438
2015 Coolon JD, Stevenson KR, McManus CJ, Yang B, Graveley BR, Wittkopp PJ. Molecular Mechanisms and Evolutionary Processes Contributing to Accelerated Divergence of Gene Expression on the Drosophila X Chromosome. Molecular Biology and Evolution. PMID 26041937 DOI: 10.1093/Molbev/Msv135  0.598
2014 Lee H, McManus CJ, Cho DY, Eaton M, Renda F, Somma MP, Cherbas L, May G, Powell S, Zhang D, Zhan L, Resch A, Andrews J, Celniker SE, Cherbas P, et al. DNA copy number evolution in Drosophila cell lines. Genome Biology. 15: R70. PMID 25262759 DOI: 10.1186/Gb-2014-15-8-R70  0.575
2014 Talkish J, May G, Lin Y, Woolford JL, McManus CJ. Mod-seq: high-throughput sequencing for chemical probing of RNA structure. Rna (New York, N.Y.). 20: 713-20. PMID 24664469 DOI: 10.1261/Rna.042218.113  0.365
2014 Coolon JD, McManus CJ, Stevenson KR, Graveley BR, Wittkopp PJ. Tempo and mode of regulatory evolution in Drosophila. Genome Research. 24: 797-808. PMID 24567308 DOI: 10.1101/Gr.163014.113  0.619
2014 McManus CJ, Coolon JD, Eipper-Mains J, Wittkopp PJ, Graveley BR. Evolution of splicing regulatory networks in Drosophila. Genome Research. 24: 786-96. PMID 24515119 DOI: 10.1101/Gr.161521.113  0.611
2014 Rafiq K, Shashikant T, McManus CJ, Ettensohn CA. Genome-wide analysis of the skeletogenic gene regulatory network of sea urchins. Development (Cambridge, England). 141: 950-61. PMID 24496631 DOI: 10.1242/Dev.105585  0.45
2014 McManus CJ, May GE, Spealman P, Shteyman A. Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast. Genome Research. 24: 422-30. PMID 24318730 DOI: 10.1101/Gr.164996.113  0.444
2014 McManus CJ, Coolon JD, Duff MO, Eipper-Mains J, Graveley BR, Wittkopp PJ. Regulatory divergence in Drosophila revealed by mRNA-seq (Genome Research (2010) 20, (816-825)) Genome Research. 24: 1051.  0.549
2013 Dembowski JA, Ramesh M, McManus CJ, Woolford JL. Identification of the binding site of Rlp7 on assembling 60S ribosomal subunits in Saccharomyces cerevisiae. Rna (New York, N.Y.). 19: 1639-47. PMID 24129494 DOI: 10.1261/Rna.041194.113  0.338
2013 Eipper-Mains JE, Kiraly DD, Duff MO, Horowitz MJ, McManus CJ, Eipper BA, Graveley BR, Mains RE. Effects of cocaine and withdrawal on the mouse nucleus accumbens transcriptome. Genes, Brain, and Behavior. 12: 21-33. PMID 23094851 DOI: 10.1111/J.1601-183X.2012.00873.X  0.523
2012 Coolon JD, Stevenson KR, McManus CJ, Graveley BR, Wittkopp PJ. Genomic imprinting absent in Drosophila melanogaster adult females. Cell Reports. 2: 69-75. PMID 22840398 DOI: 10.1016/J.Celrep.2012.06.013  0.618
2011 McManus CJ, Graveley BR. RNA structure and the mechanisms of alternative splicing. Current Opinion in Genetics & Development. 21: 373-9. PMID 21530232 DOI: 10.1016/J.Gde.2011.04.001  0.626
2011 May GE, Olson S, McManus CJ, Graveley BR. Competing RNA secondary structures are required for mutually exclusive splicing of the Dscam exon 6 cluster. Rna (New York, N.Y.). 17: 222-9. PMID 21159795 DOI: 10.1261/Rna.2521311  0.626
2010 McManus CJ, Duff MO, Eipper-Mains J, Graveley BR. Global analysis of trans-splicing in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 107: 12975-9. PMID 20615941 DOI: 10.1073/Pnas.1007586107  0.653
2010 McManus CJ, Coolon JD, Duff MO, Eipper-Mains J, Graveley BR, Wittkopp PJ. Regulatory divergence in Drosophila revealed by mRNA-seq. Genome Research. 20: 816-25. PMID 20354124 DOI: 10.1101/Gr.102491.109  0.64
2008 McManus CJ, Graveley BR. Getting the message out. Molecular Cell. 31: 4-6. PMID 18614041 DOI: 10.1016/J.Molcel.2008.06.010  0.581
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