Siddharth S. Dey, Ph.D. - Publications

Affiliations: 
Chemical Engineering University of California, Berkeley, Berkeley, CA 
Area:
viral gene delivery, stem cells

14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Markodimitraki CM, Rang FJ, Rooijers K, de Vries SS, Chialastri A, de Luca KL, Lochs SJA, Mooijman D, Dey SS, Kind J. Simultaneous quantification of protein-DNA interactions and transcriptomes in single cells with scDam&T-seq. Nature Protocols. PMID 32350457 DOI: 10.1038/s41596-020-0314-8  0.68
2020 Gell JJ, Liu W, Sosa E, Chialastri A, Hancock G, Tao Y, Wamaitha SE, Bower G, Dey SS, Clark AT. An Extended Culture System that Supports Human Primordial Germ Cell-like Cell Survival and Initiation of DNA Methylation Erasure. Stem Cell Reports. PMID 32059791 DOI: 10.1016/j.stemcr.2020.01.009  0.68
2020 Chen JCC, Sumner RL, Krishnamurthy Naga V, Hoeh N, Ayeni HA, Singh V, Sundram F, Campbell D, Muthukumaraswamy S. A randomised, double-blind, active placebo-controlled, parallel groups, dose-response study of scopolamine hydrobromide (4-6 μg/kg) in patients with major depressive disorder. Trials. 21: 157. PMID 32041658 DOI: 10.1186/s13063-020-4089-6  0.48
2019 Jang J, Han D, Golkaram M, Audouard M, Liu G, Bridges D, Hellander S, Chialastri A, Dey SS, Petzold LR, Kosik KS. Control over single-cell distribution of G1 lengths by WNT governs pluripotency. Plos Biology. 17: e3000453. PMID 31557150 DOI: 10.1371/journal.pbio.3000453  0.68
2019 Rooijers K, Markodimitraki CM, Rang FJ, de Vries SS, Chialastri A, de Luca KL, Mooijman D, Dey SS, Kind J. Simultaneous quantification of protein-DNA contacts and transcriptomes in single cells. Nature Biotechnology. PMID 31209373 DOI: 10.1038/s41587-019-0150-y  0.68
2016 Mooijman D, Dey SS, Boisset JC, Crosetto N, van Oudenaarden A. Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction. Nature Biotechnology. PMID 27347753 DOI: 10.1038/nbt.3598  0.68
2015 Kind J, Pagie L, de Vries SS, Nahidiazar L, Dey SS, Bienko M, Zhan Y, Lajoie B, de Graaf CA, Amendola M, Fudenberg G, Imakaev M, Mirny LA, Jalink K, Dekker J, et al. Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells. Cell. 163: 134-47. PMID 26365489 DOI: 10.1016/j.cell.2015.08.040  0.68
2015 Dey SS, Foley JE, Limsirichai P, Schaffer DV, Arkin AP. Orthogonal control of expression mean and variance by epigenetic features at different genomic loci. Molecular Systems Biology. 11: 806. PMID 25943345 DOI: 10.15252/msb.20145704  0.72
2015 Dey SS, Kester L, Spanjaard B, Bienko M, van Oudenaarden A. Integrated genome and transcriptome sequencing of the same cell. Nature Biotechnology. 33: 285-9. PMID 25599178 DOI: 10.1038/nbt.3129  0.72
2015 Kind J, Pagie L, deVries SS, Nahidiazar L, Dey SS, Bienko M, Zhan Y, Lajoie B, deGraaf CA, Amendola M, Fudenberg G, Imakaev M, Mirny LA, Jalink K, Dekker J, et al. Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells Cell. DOI: 10.1016/j.cell.2015.08.040  0.72
2014 Wong VC, Fong LE, Adams NM, Xue Q, Dey SS, Miller-Jensen K. Quantitative evaluation and optimization of co-drugging to improve anti-HIV latency therapy. Cellular and Molecular Bioengineering. 7: 320-333. PMID 26191086 DOI: 10.1007/s12195-014-0336-9  0.72
2012 Miller-Jensen K, Dey SS, Pham N, Foley JE, Arkin AP, Schaffer DV. Chromatin accessibility at the HIV LTR promoter sets a threshold for NF-κB mediated viral gene expression. Integrative Biology : Quantitative Biosciences From Nano to Macro. 4: 661-71. PMID 22555315 DOI: 10.1039/c2ib20009k  0.72
2012 Dey SS, Xue Y, Joachimiak MP, Friedland GD, Burnett JC, Zhou Q, Arkin AP, Schaffer DV. Mutual information analysis reveals coevolving residues in Tat that compensate for two distinct functions in HIV-1 gene expression. The Journal of Biological Chemistry. 287: 7945-55. PMID 22253435 DOI: 10.1074/jbc.M111.302653  0.72
2011 Miller-Jensen K, Dey SS, Schaffer DV, Arkin AP. Varying virulence: epigenetic control of expression noise and disease processes. Trends in Biotechnology. 29: 517-25. PMID 21700350 DOI: 10.1016/j.tibtech.2011.05.004  0.72
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