Ye Zheng, Ph.D. - Publications

Affiliations: 
2003 Columbia University, New York, NY 
Area:
Immunology, Microbiology

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Liu Z, Lee DS, Liang Y, Zheng Y, Dixon JR. Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity. Nature Communications. 14: 6943. PMID 37932264 DOI: 10.1038/s41467-023-42647-y  0.413
2023 Chen D, Varanasi SK, Hara T, Traina K, Sun M, McDonald B, Farsakoglu Y, Clanton J, Xu S, Garcia-Rivera L, Mann TH, Du V, Chung HK, Xu Z, Tripple V, ... ... Zheng Y, et al. CTLA-4 blockade induces CD4 T cell IFNγ-driven microglial phagocytosis and anti-tumor function in glioblastoma. Immunity. PMID 37572655 DOI: 10.1016/j.immuni.2023.07.015  0.363
2023 Liu Z, Lee DS, Liang Y, Zheng Y, Dixon JR. Foxp3 Orchestrates Reorganization of Chromatin Architecture to Establish Regulatory T Cell Identity. Biorxiv : the Preprint Server For Biology. PMID 36865315 DOI: 10.1101/2023.02.22.529589  0.413
2023 Ma S, Yang Q, Chen N, Zheng A, Abbasi N, Wang G, Patel PR, Cho BS, Yee BA, Zhang L, Chu H, Evans SM, Yeo GW, Zheng Y, Huang WJM. RNA binding protein DDX5 restricts RORγt T suppressor function to promote intestine inflammation. Science Advances. 9: eadd6165. PMID 36724232 DOI: 10.1126/sciadv.add6165  0.434
2022 Fu T, Li Y, Oh TG, Cayabyab F, He N, Tang Q, Coulter S, Truitt M, Medina P, He M, Yu RT, Atkins A, Zheng Y, Liddle C, Downes M, et al. FXR mediates ILC-intrinsic responses to intestinal inflammation. Proceedings of the National Academy of Sciences of the United States of America. 119: e2213041119. PMID 36508655 DOI: 10.1073/pnas.2213041119  0.441
2022 Liu Z, Hu X, Liang Y, Yu J, Li H, Shokhirev MN, Zheng Y. Glucocorticoid signaling and regulatory T cells cooperate to maintain the hair-follicle stem-cell niche. Nature Immunology. PMID 35739197 DOI: 10.1038/s41590-022-01244-9  0.413
2022 Choi J, Oh TG, Jung H, Park KY, Shin H, Jo T, Kang DS, Chanda D, Hong S, Kim J, Hwang H, Ji M, Jung M, Matsushima A, Kim P, ... ... Zheng Y, et al. Estrogen-Related Receptor γ maintains pancreatic acinar cell function and identity by regulating cellular metabolism. Gastroenterology. PMID 35461826 DOI: 10.1053/j.gastro.2022.04.013  0.745
2022 Bapat SP, Whitty C, Mowery CT, Liang Y, Yoo A, Jiang Z, Peters MC, Zhang LJ, Vogel I, Zhou C, Nguyen VQ, Li Z, Chang C, Zhu WS, Hastie AT, ... ... Zheng Y, et al. Obesity alters pathology and treatment response in inflammatory disease. Nature. PMID 35355021 DOI: 10.1038/s41586-022-04536-0  0.775
2021 Arnett A, Moo KG, Flynn KJ, Sundberg TB, Johannessen L, Shamji AF, Gray NS, Decker T, Zheng Y, Gersuk VH, Rahman ZS, Levy DE, Marié IJ, Linsley PS, Xavier RJ, et al. The CDK8 inhibitor DCA promotes a tolerogenic chemical immunophenotype in CD4 T cells via a novel CDK8-GATA3-FOXP3 pathway. Molecular and Cellular Biology. MCB0008521. PMID 34124936 DOI: 10.1128/MCB.00085-21  0.409
2020 Loo CS, Gatchalian J, Liang Y, Leblanc M, Xie M, Ho J, Venkatraghavan B, Hargreaves DC, Zheng Y. A Genome-wide CRISPR Screen Reveals a Role for the Non-Canonical Nucleosome-Remodeling BAF Complex in Foxp3 Expression and Regulatory T Cell Function. Immunity. PMID 32640256 DOI: 10.1016/J.Immuni.2020.06.011  0.521
2020 Hang S, Paik D, Yao L, Kim E, Trinath J, Lu J, Ha S, Nelson BN, Kelly SP, Wu L, Zheng Y, Longman RS, Rastinejad F, Devlin AS, Krout MR, et al. Author Correction: Bile acid metabolites control T17 and T cell differentiation. Nature. PMID 32094662 DOI: 10.1038/S41586-020-2030-5  0.436
2019 Hang S, Paik D, Yao L, Kim E, Jamma T, Lu J, Ha S, Nelson BN, Kelly SP, Wu L, Zheng Y, Longman RS, Rastinejad F, Devlin AS, Krout MR, et al. Bile acid metabolites control T17 and T cell differentiation. Nature. PMID 31776512 DOI: 10.1038/S41586-019-1785-Z  0.553
2019 Bapat SP, Liang Y, Zheng Y. Characterization of Immune Cells from Adipose Tissue. Current Protocols in Immunology. 126: e86. PMID 31483101 DOI: 10.1002/Cpim.86  0.765
2019 Chang C, Loo CS, Zhao X, Solt LA, Liang Y, Bapat SP, Cho H, Kamenecka TM, Leblanc M, Atkins AR, Yu RT, Downes M, Burris TP, Evans RM, Zheng Y. The nuclear receptor REV-ERBα modulates Th17 cell-mediated autoimmune disease. Proceedings of the National Academy of Sciences of the United States of America. PMID 31455731 DOI: 10.1073/Pnas.1907563116  0.783
2019 Owen DL, Mahmud SA, Sjaastad LE, Williams JB, Spanier JA, Simeonov DR, Ruscher R, Huang W, Proekt I, Miller CN, Hekim C, Jeschke JC, Aggarwal P, Broeckel U, LaRue RS, ... ... Zheng Y, et al. Thymic regulatory T cells arise via two distinct developmental programs. Nature Immunology. PMID 30643267 DOI: 10.1038/S41590-018-0289-6  0.708
2018 Klann JE, Kim SH, Remedios KA, He Z, Metz PJ, Lopez J, Tysl T, Olvera JG, Ablack JN, Cantor JM, Boland BS, Yeo G, Zheng Y, Lu LF, Bui JD, et al. Integrin Activation Controls Regulatory T Cell-Mediated Peripheral Tolerance. Journal of Immunology (Baltimore, Md. : 1950). PMID 29703862 DOI: 10.4049/Jimmunol.1800112  0.524
2017 Cao Q, Zhao X, Bai J, Gery S, Sun H, Lin DC, Chen Q, Chen Z, Mack L, Yang H, Deng R, Shi X, Chong LW, Cho H, Xie J, ... ... Zheng Y, et al. Circadian clock cryptochrome proteins regulate autoimmunity. Proceedings of the National Academy of Sciences of the United States of America. PMID 29109286 DOI: 10.1073/Pnas.1619119114  0.545
2017 He N, Fan W, Henriquez B, Yu RT, Atkins AR, Liddle C, Zheng Y, Downes M, Evans RM. Metabolic control of regulatory T cell (Treg) survival and function by Lkb1. Proceedings of the National Academy of Sciences of the United States of America. PMID 29109251 DOI: 10.1073/Pnas.1715363114  0.583
2017 Wang J, He N, Zhang N, Quan D, Zhang S, Zhang C, Yu RT, Atkins AR, Zhu R, Yang C, Cui Y, Liddle C, Downes M, Xiao H, Zheng Y, et al. NCoR1 restrains thymic negative selection by repressing Bim expression to spare thymocytes undergoing positive selection. Nature Communications. 8: 959. PMID 29038463 DOI: 10.1038/S41467-017-00931-8  0.501
2017 Zheng Y. A Rogue Foxp3 Mutant Undermines Treg Cell Function. Immunity. 47: 211-214. PMID 28813651 DOI: 10.1016/J.Immuni.2017.07.024  0.429
2017 Klann JE, Remedios KA, Kim SH, Metz PJ, Lopez J, Mack LA, Zheng Y, Ginsberg MH, Petrich BG, Chang JT. Talin Plays a Critical Role in the Maintenance of the Regulatory T Cell Pool. Journal of Immunology (Baltimore, Md. : 1950). PMID 28515282 DOI: 10.4049/Jimmunol.1601165  0.562
2016 Chinen T, Kannan AK, Levine AG, Fan X, Klein U, Zheng Y, Gasteiger G, Feng Y, Fontenot JD, Rudensky AY. An essential role for the IL-2 receptor in Treg cell function. Nature Immunology. PMID 27595233 DOI: 10.1038/Ni.3540  0.769
2016 Liu WH, Kang SG, Huang Z, Wu CJ, Jin HY, Maine CJ, Liu Y, Shepherd J, Sabouri-Ghomi M, Gonzalez-Martin A, Xu S, Hoffmann A, Zheng Y, Lu LF, Xiao N, et al. A miR-155-Peli1-c-Rel pathway controls the generation and function of T follicular helper cells. The Journal of Experimental Medicine. PMID 27481129 DOI: 10.1084/Jem.20160204  0.342
2016 Zhang J, Cao Y, Wang J, Guo X, Zheng Y, Zhao W, Mei X, Guo T, Yang Z. Physicochemical characteristics and bioactivities of the exopolysaccharide and its sulphated polymer from Streptococcus thermophilus GST-6. Carbohydrate Polymers. 146: 368-75. PMID 27112886 DOI: 10.1016/j.carbpol.2016.03.063  0.32
2016 Wang L, Zhang H, Jin P, Guo X, Li Y, Fan C, Wang J, Zheng Y. Enhancement of storage quality and antioxidant capacity of harvested sweet cherry fruit by immersion with β-aminobutyric acid Postharvest Biology and Technology. 118: 71-78. DOI: 10.1016/j.postharvbio.2016.03.023  0.31
2016 Liu Z, Zheng Y, Pan F, Lin Q, Ma P, Wang J. Investigation of laser induced damage threshold measurement with single-shot on thin films Applied Surface Science. 382: 294-301. DOI: 10.1016/J.Apsusc.2016.04.093  0.32
2015 Bapat SP, Myoung Suh J, Fang S, Liu S, Zhang Y, Cheng A, Zhou C, Liang Y, LeBlanc M, Liddle C, Atkins AR, Yu RT, Downes M, Evans RM, Zheng Y. Depletion of fat-resident Treg cells prevents age-associated insulin resistance. Nature. PMID 26580014 DOI: 10.1038/Nature16151  0.753
2015 Hernandez JB, Chang C, LeBlanc M, Grimm D, Le Lay J, Kaestner KH, Zheng Y, Montminy M. The CREB/CRTC2 pathway modulates autoimmune disease by promoting Th17 differentiation. Nature Communications. 6: 7216. PMID 26031354 DOI: 10.1038/Ncomms8216  0.518
2015 Li X, Zheng Y. Regulatory T cell identity: formation and maintenance. Trends in Immunology. 36: 344-53. PMID 25981968 DOI: 10.1016/J.It.2015.04.006  0.55
2014 Li X, Zheng Y. Treg identity protection by an epigenetic switch. Cell Cycle (Georgetown, Tex.). 13: 3159-60. PMID 25485491 DOI: 10.4161/15384101.2014.969996  0.449
2014 Li X, Liang Y, LeBlanc M, Benner C, Zheng Y. Function of a Foxp3 cis-element in protecting regulatory T cell identity. Cell. 158: 734-48. PMID 25126782 DOI: 10.1016/J.Cell.2014.07.030  0.507
2012 Josefowicz SZ, Niec RE, Kim HY, Treuting P, Chinen T, Zheng Y, Umetsu DT, Rudensky AY. Extrathymically generated regulatory T cells control mucosal TH2 inflammation. Nature. 482: 395-9. PMID 22318520 DOI: 10.1038/Nature10772  0.797
2011 Zheng Y. ChIP-on-chip for FoxP3. Methods in Molecular Biology (Clifton, N.J.). 707: 71-82. PMID 21287330 DOI: 10.1007/978-1-61737-979-6_6  0.532
2010 Zheng Y, Josefowicz S, Chaudhry A, Peng XP, Forbush K, Rudensky AY. Role of conserved non-coding DNA elements in the Foxp3 gene in regulatory T-cell fate. Nature. 463: 808-12. PMID 20072126 DOI: 10.1038/Nature08750  0.799
2009 Zheng Y, Chaudhry A, Kas A, deRoos P, Kim JM, Chu TT, Corcoran L, Treuting P, Klein U, Rudensky AY. Regulatory T-cell suppressor program co-opts transcription factor IRF4 to control T(H)2 responses. Nature. 458: 351-6. PMID 19182775 DOI: 10.1038/Nature07674  0.68
2007 Wang J, Wang X, Hussain S, Zheng Y, Sanjabi S, Ouaaz F, Beg AA. Distinct roles of different NF-kappa B subunits in regulating inflammatory and T cell stimulatory gene expression in dendritic cells. Journal of Immunology (Baltimore, Md. : 1950). 178: 6777-88. PMID 17513725 DOI: 10.4049/Jimmunol.178.11.6777  0.707
2007 Zheng Y, Rudensky AY. Foxp3 in control of the regulatory T cell lineage. Nature Immunology. 8: 457-62. PMID 17440451 DOI: 10.1038/Ni1455  0.68
2007 Zheng Y, Josefowicz SZ, Kas A, Chu TT, Gavin MA, Rudensky AY. Genome-wide analysis of Foxp3 target genes in developing and mature regulatory T cells. Nature. 445: 936-40. PMID 17237761 DOI: 10.1038/Nature05563  0.785
2006 Rudensky AY, Gavin M, Zheng Y. FOXP3 and NFAT: partners in tolerance. Cell. 126: 253-6. PMID 16873058 DOI: 10.1016/J.Cell.2006.07.005  0.679
2006 Hsieh CS, Zheng Y, Liang Y, Fontenot JD, Rudensky AY. An intersection between the self-reactive regulatory and nonregulatory T cell receptor repertoires. Nature Immunology. 7: 401-10. PMID 16532000 DOI: 10.1038/Ni1318  0.791
2003 Prendes M, Zheng Y, Beg AA. Regulation of developing B cell survival by RelA-containing NF-kappa B complexes. Journal of Immunology (Baltimore, Md. : 1950). 171: 3963-9. PMID 14530314 DOI: 10.4049/Jimmunol.171.8.3963  0.631
2003 Qu J, Li X, Novitch BG, Zheng Y, Kohn M, Xie JM, Kozinn S, Bronson R, Beg AA, Minden A. PAK4 kinase is essential for embryonic viability and for proper neuronal development. Molecular and Cellular Biology. 23: 7122-33. PMID 14517283 DOI: 10.1128/Mcb.23.20.7122-7133.2003  0.582
2003 Zheng Y, Vig M, Lyons J, Van Parijs L, Beg AA. Combined deficiency of p50 and cRel in CD4+ T cells reveals an essential requirement for nuclear factor kappaB in regulating mature T cell survival and in vivo function. The Journal of Experimental Medicine. 197: 861-74. PMID 12668645 DOI: 10.1084/Jem.20021610  0.713
2002 Tao X, Xu Y, Zheng Y, Beg AA, Tong L. An extensively associated dimer in the structure of the C713S mutant of the TIR domain of human TLR2. Biochemical and Biophysical Research Communications. 299: 216-21. PMID 12437972 DOI: 10.1016/S0006-291X(02)02581-0  0.559
2002 Ouaaz F, Arron J, Zheng Y, Choi Y, Beg AA. Dendritic cell development and survival require distinct NF-kappaB subunits. Immunity. 16: 257-70. PMID 11869686 DOI: 10.1016/S1074-7613(02)00272-8  0.633
2001 Li M, Carpio DF, Zheng Y, Bruzzo P, Singh V, Ouaaz F, Medzhitov RM, Beg AA. An essential role of the NF-kappa B/Toll-like receptor pathway in induction of inflammatory and tissue-repair gene expression by necrotic cells. Journal of Immunology (Baltimore, Md. : 1950). 166: 7128-35. PMID 11390458 DOI: 10.4049/Jimmunol.166.12.7128  0.639
2001 Zheng Y, Ouaaz F, Bruzzo P, Singh V, Gerondakis S, Beg AA. NF-kappa B RelA (p65) is essential for TNF-alpha-induced fas expression but dispensable for both TCR-induced expression and activation-induced cell death. Journal of Immunology (Baltimore, Md. : 1950). 166: 4949-57. PMID 11290773 DOI: 10.4049/Jimmunol.166.8.4949  0.688
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