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Kellie J. Archer, Ph.D. - Publications

Affiliations: 
2001 Ohio State University, Columbus, Columbus, OH 
Area:
Biostatistics Biology, Statistics
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44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Bill M, Nicolet D, Kohlschmidt J, Walker CJ, Mrózek K, Eisfeld AK, Papaioannou D, Rong-Mullins X, Brannan Z, Kolitz JE, Powell BL, Archer KJ, Dorrance AM, Carroll AJ, Stone RM, et al. Mutations associated with a 17-gene leukemia stem cell score and its prognostic relevance in the context of the European LeukemiaNet classification for acute myeloid leukemia. Haematologica. PMID 31413100 DOI: 10.3324/Haematol.2019.225003  0.322
2016 Siangphoe U, Archer KJ. Estimation of random effects and identifying heterogeneous genes in meta-analysis of gene expression studies. Briefings in Bioinformatics. PMID 27345525 DOI: 10.1093/Bib/Bbw050  0.348
2015 Williams AA, Archer KJ. Elastic Net Constrained Stereotype Logit Model for Ordered Categorical Data. Biometrics & Biostatistics International Journal. 2. PMID 30058001 DOI: 10.15406/Bbij.2015.02.00049  0.367
2015 Siangphoe U, Archer KJ. Gene Expression in HIV-Associated Neurocognitive Disorders: A Meta-Analysis. Journal of Acquired Immune Deficiency Syndromes (1999). 70: 479-88. PMID 26569176 DOI: 10.1097/Qai.0000000000000800  0.316
2015 Makowski M, Archer KJ. Generalized monotone incremental forward stagewise method for modeling count data: application predicting micronuclei frequency. Cancer Informatics. 14: 97-105. PMID 25983544 DOI: 10.4137/Cin.S17278  0.314
2015 Ferber K, Archer KJ. Modeling discrete survival time using genomic feature data. Cancer Informatics. 14: 37-43. PMID 25861216 DOI: 10.4137/Cin.S17275  0.323
2015 Hou J, Archer KJ. Regularization method for predicting an ordinal response using longitudinal high-dimensional genomic data. Statistical Applications in Genetics and Molecular Biology. 14: 93-111. PMID 25720102 DOI: 10.1515/Sagmb-2014-0004  0.311
2014 Archer KJ, Hou J, Zhou Q, Ferber K, Layne JG, Gentry AE. ordinalgmifs: An R Package for Ordinal Regression in High-dimensional Data Settings. Cancer Informatics. 13: 187-95. PMID 25574124 DOI: 10.4137/Cin.S20806  0.311
2012 Gehrau R, Mas V, Archer K, Maluf D. Biomarkers of disease differentiation: HCV recurrence versus acute cellular rejection. Fibrogenesis & Tissue Repair. 5: S11. PMID 23259646 DOI: 10.1186/1755-1536-5-S1-S11  0.303
2012 Kaur S, Archer KJ, Devi MG, Kriplani A, Strauss JF, Singh R. Differential gene expression in granulosa cells from polycystic ovary syndrome patients with and without insulin resistance: identification of susceptibility gene sets through network analysis. The Journal of Clinical Endocrinology and Metabolism. 97: E2016-21. PMID 22904171 DOI: 10.1210/Jc.2011-3441  0.306
2012 Asomaning N, Archer KJ. High-throughput DNA methylation datasets for evaluating false discovery rate methodologies. Computational Statistics & Data Analysis. 56: 1748-1756. PMID 22611297 DOI: 10.1016/J.Csda.2011.10.020  0.31
2012 Mas VR, Archer KJ, Dumur CI, Scian MJ, Suh JL, King AL, Wardius ME, Straub JA, Posner MP, Brayman K, Maluf DG. Reduced expression of inflammatory genes in deceased donor kidneys undergoing pulsatile pump preservation. Plos One. 7: e35526. PMID 22545113 DOI: 10.1371/Journal.Pone.0035526  0.315
2012 Archer KJ, Williams AA. L1 penalized continuation ratio models for ordinal response prediction using high-dimensional datasets. Statistics in Medicine. 31: 1464-74. PMID 22359384 DOI: 10.1002/Sim.4484  0.311
2011 Mas VR, Scian MJ, Archer KJ, Suh JL, David KG, Ren Q, Gehr TW, King AL, Posner MP, Mueller TF, Maluf DG. Pretransplant transcriptome profiles identify among kidneys with delayed graft function those with poorer quality and outcome. Molecular Medicine (Cambridge, Mass.). 17: 1311-22. PMID 21912807 DOI: 10.2119/Molmed.2011.00159  0.339
2011 Kopec AK, D'Souza ML, Mets BD, Burgoon LD, Reese SE, Archer KJ, Potter D, Tashiro C, Sharratt B, Harkema JR, Zacharewski TR. Non-additive hepatic gene expression elicited by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) and 2,2',4,4',5,5'-hexachlorobiphenyl (PCB153) co-treatment in C57BL/6 mice. Toxicology and Applied Pharmacology. 256: 154-67. PMID 21851831 DOI: 10.1016/J.Taap.2011.08.002  0.303
2011 Gehrau R, Mas V, Archer KJ, Maluf D. Molecular classification and clonal differentiation of hepatocellular carcinoma: the step forward for patient selection for liver transplantation. Expert Review of Gastroenterology & Hepatology. 5: 539-52. PMID 21780900 DOI: 10.1586/Egh.11.48  0.306
2011 Mas V, Maluf D, Archer KJ, Potter A, Suh J, Gehrau R, Descalzi V, Villamil F. Transcriptome at the time of hepatitis C virus recurrence may predict the severity of fibrosis progression after liver transplantation. Liver Transplantation : Official Publication of the American Association For the Study of Liver Diseases and the International Liver Transplantation Society. 17: 824-35. PMID 21618696 DOI: 10.1002/Lt.22309  0.333
2011 Redmond LC, Dumur CI, Archer KJ, Grayson DR, Haar JL, Lloyd JA. Krüppel-like factor 2 regulated gene expression in mouse embryonic yolk sac erythroid cells. Blood Cells, Molecules & Diseases. 47: 1-11. PMID 21530336 DOI: 10.1016/J.Bcmd.2011.03.002  0.33
2011 Gehrau R, Maluf D, Archer K, Stravitz R, Suh J, Le N, Mas V. Molecular pathways differentiate hepatitis C virus (HCV) recurrence from acute cellular rejection in HCV liver recipients Molecular Medicine. 17: 824-833. PMID 21519635 DOI: 10.2119/Molmed.2011.00072  0.321
2010 Mas VR, Archer KJ, Suh L, Scian M, Posner MP, Maluf DG. Distinctive gene expression profiles characterize donor biopsies from HCV-positive kidney donors. Transplantation. 90: 1172-9. PMID 20935597 DOI: 10.1097/Tp.0B013E3181F9Ca6C  0.313
2010 Edmiston JS, Archer KJ, Scian MJ, Joyce AR, Zedler BK, Murrelle EL. Gene expression profiling of peripheral blood leukocytes identifies potential novel biomarkers of chronic obstructive pulmonary disease in current and former smokers. Biomarkers : Biochemical Indicators of Exposure, Response, and Susceptibility to Chemicals. 15: 715-30. PMID 20887155 DOI: 10.3109/1354750X.2010.512091  0.306
2010 Archer KJ, Zhao Z, Guennel T, Maluf DG, Fisher RA, Mas VR. Identifying genes progressively silenced in preneoplastic and neoplastic liver tissues. International Journal of Computational Biology and Drug Design. 3: 52-67. PMID 20693610 DOI: 10.1504/Ijcbdd.2010.034499  0.339
2010 Suh LJ, Mas V, Archer KJ, Scian MJ, King A, Gehr TW, Fassnacht R, Whitehill BC, Kapoor S, Sharma A, Cotterell A, Posner MP, Maluf D. Characteristic Gene Expression Profiles In Hcv Positive Kidney Donors: 1865 Transplantation. 90: 503. DOI: 10.1097/00007890-201007272-00938  0.311
2010 Fassnacht R, Maluf D, Archer KJ, Scian MJ, Whitehill BC, Suh LJ, King A, Cotterell A, Sharma A, Gehr TW, Posner MP, Mas V. Temporal Gene Expression Changes Occurring In The Kidney Graft Post-Transplantation: 1976 Transplantation. 90: 331. DOI: 10.1097/00007890-201007272-00623  0.312
2010 Scian MJ, Maluf D, Archer KJ, Whitehill BC, Suh LJ, King A, Gehr TW, Sharma A, Kapoor S, Cotterell A, Massey DH, Posner MP, Mas V. Discerning Gene Expression Profiles Involved In Loss Of Graft Function With If/Ta: Utility In Diagnosis And Disease Progression.: 1983 Transplantation. 90: 14. DOI: 10.1097/00007890-201007272-00027  0.318
2009 Archer KJ, Mas VR, David K, Maluf DG, Bornstein K, Fisher RA. Identifying genes for establishing a multigenic test for hepatocellular carcinoma surveillance in hepatitis C virus-positive cirrhotic patients. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. 18: 2929-32. PMID 19861515 DOI: 10.1158/1055-9965.Epi-09-0767  0.356
2009 Archer KJ, Mas VR, O'Brien TR, Pfeiffer R, Lum NL, Fisher RA. Quality assessment of microarray data in a multicenter study. Diagnostic Molecular Pathology : the American Journal of Surgical Pathology, Part B. 18: 34-43. PMID 19214110 DOI: 10.1097/Pdm.0B013E3181731E14  0.308
2009 Mas VR, Maluf DG, Archer KJ, Yanek K, Kong X, Kulik L, Freise CE, Olthoff KM, Ghobrial RM, McIver P, Fisher R. Genes involved in viral carcinogenesis and tumor initiation in hepatitis C virus-induced hepatocellular carcinoma. Molecular Medicine (Cambridge, Mass.). 15: 85-94. PMID 19098997 DOI: 10.2119/Molmed.2008.00110  0.307
2008 Mas VR, Archer KJ, Yanek K, Dumur CI, Capparuccini MI, Mangino MJ, King A, Gibney EM, Fisher R, Posner M, Maluf D. Gene expression patterns in deceased donor kidneys developing delayed graft function after kidney transplantation. Transplantation. 85: 626-35. PMID 18347543 DOI: 10.1097/Tp.0B013E318165491F  0.314
2008 Kong X, Mas V, Archer KJ. A non-parametric meta-analysis approach for combining independent microarray datasets: application using two microarray datasets pertaining to chronic allograft nephropathy. Bmc Genomics. 9: 98. PMID 18302764 DOI: 10.1186/1471-2164-9-98  0.378
2008 Maluf DG, Mas VR, Archer KJ, Yanek K, Gibney EM, King AL, Cotterell A, Fisher RA, Posner MP. Molecular pathways involved in loss of kidney graft function with tubular atrophy and interstitial fibrosis. Molecular Medicine (Cambridge, Mass.). 14: 276-85. PMID 18286166 DOI: 10.2119/2007-00111.Maluf  0.364
2008 Redmond LC, Dumur CI, Archer KJ, Haar JL, Lloyd JA. Identification of erythroid-enriched gene expression in the mouse embryonic yolk sac using microdissected cells. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 237: 436-46. PMID 18213587 DOI: 10.1002/Dvdy.21426  0.34
2008 Archer KJ, Kimes RV. Empirical characterization of random forest variable importance measures Computational Statistics and Data Analysis. 52: 2249-2260. DOI: 10.1016/J.Csda.2007.08.015  0.304
2007 Mas VR, Mas LA, Archer KJ, Yanek K, King AL, Gibney EM, Cotterell A, Fisher RA, Posner M, Maluf DG. Evaluation of gene panel mRNAs in urine samples of kidney transplant recipients as a non-invasive tool of graft function. Molecular Medicine (Cambridge, Mass.). 13: 315-24. PMID 17622313 DOI: 10.2119/2007-00017.Mas  0.309
2007 Mas VR, Fisher RA, Archer KJ, Yanek KC, Williams B, Dumur CI, Maluf DG. Genes associated with progression and recurrence of hepatocellular carcinoma in hepatitis C patients waiting and undergoing liver transplantation: preliminary results. Transplantation. 83: 973-81. PMID 17460570 DOI: 10.1097/01.Tp.0000258643.05294.0B  0.337
2007 Archer KJ, Lemeshow S, Hosmer DW. Goodness-of-fit tests for logistic regression models when data are collected using a complex sampling design Computational Statistics and Data Analysis. 51: 4450-4464. DOI: 10.1016/J.Csda.2006.07.006  0.513
2006 Mas VR, Maluf DG, Archer KJ, Yanek K, Williams B, Fisher RA. Differentially expressed genes between early and advanced hepatocellular carcinoma (HCC) as a potential tool for selecting liver transplant recipients. Molecular Medicine (Cambridge, Mass.). 12: 97-104. PMID 16953559 DOI: 10.2119/2006-00032.Mas  0.339
2006 Kennedy RE, Kerns RT, Kong X, Archer KJ, Miles MF. SScore: an R package for detecting differential gene expression without gene expression summaries. Bioinformatics (Oxford, England). 22: 1272-4. PMID 16574698 DOI: 10.1093/Bioinformatics/Btl108  0.32
2006 Kennedy RE, Archer KJ, Miles MF. Empirical validation of the S-Score algorithm in the analysis of gene expression data. Bmc Bioinformatics. 7: 154. PMID 16545131 DOI: 10.1186/1471-2105-7-154  0.336
2006 Archer KJ, Lemeshow S. Goodness-of-fit test for a logistic regression model fitted using survey sample data Stata Journal. 6: 97-105. DOI: 10.1177/1536867X0600600106  0.5
2004 Dumur CI, Garrett CT, Archer KJ, Nasim S, Wilkinson DS, Ferreira-Gonzalez A. Evaluation of a linear amplification method for small samples used on high-density oligonucleotide microarray analysis. Analytical Biochemistry. 331: 314-21. PMID 15265737 DOI: 10.1016/J.Ab.2004.03.040  0.331
2004 Ben-Ezra J, Ladd AC, Dumur CI, Archer KJ, Chesney A, Ferreira-Gonzalez A, Wilkinson DS, Garrett CT. Effect of Sample Preservation Method on Gene Expression and RNA Integrity in Acute Myelogenous Leukemia. Blood. 104: 3018-3018. DOI: 10.1182/Blood.V104.11.3018.3018  0.302
2003 Baldus CD, Tanner SM, Ruppert AS, Whitman SP, Archer KJ, Marcucci G, Caligiuri MA, Carroll AJ, Vardiman JW, Powell BL, Allen SL, Moore JO, Larson RA, Kolitz JE, de la Chapelle A, et al. BAALC expression predicts clinical outcome of de novo acute myeloid leukemia patients with normal cytogenetics: a Cancer and Leukemia Group B Study. Blood. 102: 1613-8. PMID 12750167 DOI: 10.1182/Blood-2003-02-0359  0.323
2001 Tanner SM, Austin JL, Leone G, Rush LJ, Plass C, Heinonen K, Mrózek K, Sill H, Knuutila S, Kolitz JE, Archer KJ, Caligiuri MA, Bloomfield CD, de La Chapelle A. BAALC, the human member of a novel mammalian neuroectoderm gene lineage, is implicated in hematopoiesis and acute leukemia. Proceedings of the National Academy of Sciences of the United States of America. 98: 13901-6. PMID 11707601 DOI: 10.1073/Pnas.241525498  0.332
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