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Rodger Staden, PhD - Publications

Affiliations: 
Laboratory of Molecular Biology MRC Laboratory of Molecular Biology, Cambridge, England, United Kingdom 
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53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2002 Bonfield JK, Beal KF, Betts MJ, Staden R. Trev: a DNA trace editor and viewer. Bioinformatics (Oxford, England). 18: 194-5. PMID 11836229 DOI: 10.1093/Bioinformatics/18.1.194  0.499
2002 Bonfield JK, Staden R. ZTR: a new format for DNA sequence trace data. Bioinformatics (Oxford, England). 18: 3-10. PMID 11836205 DOI: 10.1093/Bioinformatics/18.1.3  0.387
2001 Staden R, Judge DP, Bonfield JK. Sequence assembly and finishing methods. Methods of Biochemical Analysis. 43: 303-22. PMID 11449730 DOI: 10.1002/0471223921.Ch13  0.469
1998 Flint J, Sims M, Clark K, Staden R, Thomas K. An oligo-screening strategy to fill gaps found during shotgun sequencing projects. Dna Sequence : the Journal of Dna Sequencing and Mapping. 8: 241-5. PMID 10520453 DOI: 10.3109/10425179809008458  0.512
1996 Bonfield JK, Staden R. Experiment files and their application during large-scale sequencing projects. Dna Sequence : the Journal of Dna Sequencing and Mapping. 6: 109-17. PMID 8907307 DOI: 10.3109/10425179609010197  0.477
1996 Staden R. The Staden sequence analysis package. Molecular Biotechnology. 5: 233-41. PMID 8837029 DOI: 10.1007/Bf02900361  0.512
1996 Staden R. Indexing and using sequence databases. Methods in Enzymology. 266: 105-14. PMID 8743680 DOI: 10.1016/S0076-6879(96)66009-1  0.481
1995 Bonfield JK, Smith Kf, Staden R. A new DNA sequence assembly program. Nucleic Acids Research. 23: 4992-9. PMID 8559656 DOI: 10.1093/Nar/23.24.4992  0.496
1995 Bonfield JK, Staden R. The application of numerical estimates of base calling accuracy to DNA sequencing projects. Nucleic Acids Research. 23: 1406-10. PMID 7753633 DOI: 10.1093/Nar/23.8.1406  0.478
1994 Staden R. Staden: searching for motifs in nucleic acid sequences. Methods in Molecular Biology (Clifton, N.J.). 25: 93-102. PMID 8004185 DOI: 10.1385/0-89603-276-0:93  0.371
1994 Staden R. Staden: translating and listing nucleic acid sequences. Methods in Molecular Biology (Clifton, N.J.). 25: 87-92. PMID 8004183 DOI: 10.1385/0-89603-276-0:87  0.364
1994 Staden R. Staden: statistical and structural analysis of nucleotide sequences. Methods in Molecular Biology (Clifton, N.J.). 25: 69-77. PMID 8004181 DOI: 10.1385/0-89603-276-0:69  0.358
1994 Staden R. Staden: sequence input, editing, and sequence library use. Methods in Molecular Biology (Clifton, N.J.). 25: 27-36. PMID 8004171 DOI: 10.1385/0-89603-276-0:27  0.445
1994 Staden R. Staden: comparing sequences. Methods in Molecular Biology (Clifton, N.J.). 25: 155-70. PMID 8004162 DOI: 10.1385/0-89603-276-0:155  0.436
1994 Staden R. Staden: using patterns to analyze protein sequences. Methods in Molecular Biology (Clifton, N.J.). 25: 141-54. PMID 8004161 DOI: 10.1385/0-89603-276-0:141  0.345
1994 Staden R. Staden: searching for motifs in protein sequences. Methods in Molecular Biology (Clifton, N.J.). 25: 131-9. PMID 8004160 DOI: 10.1385/0-89603-276-0:131  0.369
1994 Staden R. Staden: statistical and structural analysis of protein sequences. Methods in Molecular Biology (Clifton, N.J.). 25: 125-30. PMID 8004159 DOI: 10.1385/0-89603-276-0:125  0.324
1994 Staden R. Staden: analyzing sequences to find genes. Methods in Molecular Biology (Clifton, N.J.). 25: 113-24. PMID 8004158 DOI: 10.1385/0-89603-276-0:113  0.351
1994 Staden R. Staden: using patterns to analyze nucleic acid sequences. Methods in Molecular Biology (Clifton, N.J.). 25: 103-11. PMID 8004157 DOI: 10.1385/0-89603-276-0:103  0.348
1992 Sulston J, Du Z, Thomas K, Wilson R, Hillier L, Staden R, Halloran N, Green P, Thierry-Mieg J, Qiu L. The C. elegans genome sequencing project: a beginning. Nature. 356: 37-41. PMID 1538779 DOI: 10.1038/356037A0  0.459
1992 Staden R, Dear S. Indexing the sequence libraries: software providing a common indexing system for all the standard sequence libraries. Dna Sequence : the Journal of Dna Sequencing and Mapping. 3: 99-105. PMID 1457819 DOI: 10.3109/10425179209034002  0.494
1992 Dear S, Staden R. A standard file format for data from DNA sequencing instruments. Dna Sequence : the Journal of Dna Sequencing and Mapping. 3: 107-10. PMID 1457811 DOI: 10.3109/10425179209034003  0.46
1991 Gleeson TJ, Staden R. An X windows and UNIX implementation of our sequence analysis package. Computer Applications in the Biosciences : Cabios. 7: 398. PMID 1913225 DOI: 10.1093/Bioinformatics/7.3.398  0.412
1991 Dear S, Staden R. A sequence assembly and editing program for efficient management of large projects. Nucleic Acids Research. 19: 3907-11. PMID 1861983 DOI: 10.1093/Nar/19.14.3907  0.527
1991 Staden R. Screening protein and nucleic acid sequences against libraries of patterns. Dna Sequence : the Journal of Dna Sequencing and Mapping. 1: 369-74. PMID 1768860 DOI: 10.3109/10425179109020792  0.478
1990 Staden R. Finding protein coding regions in genomic sequences. Methods in Enzymology. 183: 163-80. PMID 2314274 DOI: 10.1016/0076-6879(90)83012-X  0.456
1990 Staden R. An improved sequence handling package that runs on the Apple Macintosh. Computer Applications in the Biosciences : Cabios. 6: 387-93. PMID 2257501 DOI: 10.1093/Bioinformatics/6.4.387  0.472
1990 Staden R. Searching for patterns in protein and nucleic acid sequences. Methods in Enzymology. 183: 193-211. PMID 1690333 DOI: 10.1016/0076-6879(90)83014-Z  0.496
1989 Honess RW, Gompels UA, Barrell BG, Craxton M, Cameron KR, Staden R, Chang YN, Hayward GS. Deviations from expected frequencies of CpG dinucleotides in herpesvirus DNAs may be diagnostic of differences in the states of their latent genomes. The Journal of General Virology. 70: 837-55. PMID 2732708 DOI: 10.1099/0022-1317-70-4-837  0.394
1989 Staden R. Methods for calculating the probabilities of finding patterns in sequences. Computer Applications in the Biosciences : Cabios. 5: 89-96. PMID 2720468 DOI: 10.1093/Bioinformatics/5.2.89  0.41
1989 Staden R. Methods for discovering novel motifs in nucleic acid sequences. Computer Applications in the Biosciences : Cabios. 5: 293-8. PMID 2684350 DOI: 10.1093/Bioinformatics/5.4.293  0.498
1988 Staden R. Methods to define and locate patterns of motifs in sequences. Computer Applications in the Biosciences : Cabios. 4: 53-60. PMID 2898280 DOI: 10.1093/Bioinformatics/4.1.53  0.503
1988 Sulston J, Mallett F, Staden R, Durbin R, Horsnell T, Coulson A. Software for genome mapping by fingerprinting techniques. Computer Applications in the Biosciences : Cabios. 4: 125-32. PMID 2838135 DOI: 10.1093/Bioinformatics/4.1.125  0.333
1986 Staden R. The current status and portability of our sequence handling software. Nucleic Acids Research. 14: 217-31. PMID 3511446 DOI: 10.1093/nar/14.1.217  0.338
1984 Staden R. A computer program to enter DNA gel reading data into a computer. Nucleic Acids Research. 12: 499-503. PMID 6546430 DOI: 10.1093/Nar/12.1Part2.499  0.455
1984 Staden R. Computer methods to aid the determination and analysis of DNA sequences. Biochemical Society Transactions. 12: 1005-8. PMID 6397374  0.425
1984 McLachlan AD, Staden R, Boswell DR. A method for measuring the non-random bias of a codon usage table. Nucleic Acids Research. 12: 9567-75. PMID 6393058 DOI: 10.1093/Nar/12.24.9567  0.386
1984 Staden R. Measurements of the effects that coding for a protein has on a DNA sequence and their use for finding genes. Nucleic Acids Research. 12: 551-67. PMID 6364041 DOI: 10.1093/Nar/12.1Part2.551  0.436
1984 Staden R. Graphic methods to determine the function of nucleic acid sequences. Nucleic Acids Research. 12: 521-38. PMID 6364040 DOI: 10.1093/Nar/12.1Part2.521  0.544
1984 Staden R. Computer methods to locate signals in nucleic acid sequences. Nucleic Acids Research. 12: 505-19. PMID 6364039 DOI: 10.1093/Nar/12.1Part2.505  0.464
1983 Staden R. Computer methods for DNA sequencers Laboratory Techniques in Biochemistry and Molecular Biology. 10: 311-348. DOI: 10.1016/S0075-7535(08)70413-3  0.431
1982 Staden R. Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing. Nucleic Acids Research. 10: 4731-51. PMID 7133997 DOI: 10.1093/nar/10.15.4731  0.449
1982 Staden R. An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences. Nucleic Acids Research. 10: 2951-61. PMID 7099970 DOI: 10.1093/Nar/10.9.2951  0.498
1982 Staden R, McLachlan AD. Codon preference and its use in identifying protein coding regions in long DNA sequences. Nucleic Acids Research. 10: 141-56. PMID 7063399 DOI: 10.1093/Nar/10.1.141  0.507
1981 Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJ, Staden R, Young IG. Sequence and organization of the human mitochondrial genome. Nature. 290: 457-65. PMID 7219534 DOI: 10.1038/290457a0  0.343
1981 Woo SL, Beattie WG, Catterall JF, Dugaiczyk A, Staden R, Brownlee GG, O'Malley BW. Complete nucleotide sequence of the chicken chromosomal ovalbumin gene and its biological significance. Biochemistry. 20: 6437-46. PMID 6272839 DOI: 10.1021/Bi00525A024  0.358
1980 Barrell BG, Anderson S, Bankier AT, de Bruijn MH, Chen E, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJ, Staden R, Young IG. Different pattern of codon recognition by mammalian mitochondrial tRNAs. Proceedings of the National Academy of Sciences of the United States of America. 77: 3164-6. PMID 6932013 DOI: 10.1073/Pnas.77.6.3164  0.339
1979 Staden R. A strategy of DNA sequencing employing computer programs. Nucleic Acids Research. 6: 2601-10. PMID 461197  0.423
1979 Robertson MA, Staden R, Tanaka Y, Catterall JF, O'Malley BW, Brownlee GG. Sequence of three introns in the chick ovalbumin gene. Nature. 278: 370-2. PMID 423993 DOI: 10.1038/278370A0  0.372
1978 Godson GN, Barrell BG, Staden R, Fiddes JC. Nucleotide sequence of bacteriophage G4 DNA. Nature. 276: 236-47. PMID 714153  0.372
1978 Catterall JF, O'Malley BW, Robertson MA, Staden R, Tanaka Y, Brownlee GG. Nucleotide sequence homology at 12 intron--exon junctions in the chick ovalbumin gene. Nature. 275: 510-3. PMID 692731 DOI: 10.1038/275510A0  0.369
1978 Staden R. Further procedures for sequence analysis by computer. Nucleic Acids Research. 5: 1013-6. PMID 643613  0.331
1977 Staden R. Sequence data handling by computer. Nucleic Acids Research. 4: 4037-51. PMID 593900  0.407
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