| Year |
Citation |
Score |
| 2017 |
Supek F, Škunca N. Visualizing GO Annotations. Methods in Molecular Biology (Clifton, N.J.). 1446: 207-220. PMID 27812945 DOI: 10.1007/978-1-4939-3743-1_15 |
0.449 |
|
| 2017 |
Škunca N, Roberts RJ, Steffen M. Evaluating Computational Gene Ontology Annotations. Methods in Molecular Biology (Clifton, N.J.). 1446: 97-109. PMID 27812938 DOI: 10.1007/978-1-4939-3743-1_8 |
0.41 |
|
| 2017 |
Gaudet P, Škunca N, Hu JC, Dessimoz C. Primer on the Gene Ontology. Methods in Molecular Biology (Clifton, N.J.). 1446: 25-37. PMID 27812933 DOI: 10.1007/978-1-4939-3743-1_3 |
0.73 |
|
| 2016 |
Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, et al. An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Genome Biology. 17: 184. PMID 27604469 DOI: 10.1186/S13059-016-1037-6 |
0.699 |
|
| 2015 |
Ravenhall M, Škunca N, Lassalle F, Dessimoz C. Inferring horizontal gene transfer. Plos Computational Biology. 11: e1004095. PMID 26020646 DOI: 10.1371/Journal.Pcbi.1004095 |
0.743 |
|
| 2015 |
Bastian FB, Chibucos MC, Gaudet P, Giglio M, Holliday GL, Huang H, Lewis SE, Niknejad A, Orchard S, Poux S, Skunca N, Robinson-Rechavi M. The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations. Database : the Journal of Biological Databases and Curation. 2015: bav043. PMID 25957950 DOI: 10.1093/Database/Bav043 |
0.365 |
|
| 2015 |
Egger B, Lapraz F, Tomiczek B, Müller S, Dessimoz C, Girstmair J, Škunca N, Rawlinson KA, Cameron CB, Beli E, Todaro MA, Gammoudi M, Noreña C, Telford MJ. A transcriptomic-phylogenomic analysis of the evolutionary relationships of flatworms. Current Biology : Cb. 25: 1347-53. PMID 25866392 DOI: 10.1016/J.Cub.2015.03.034 |
0.679 |
|
| 2015 |
Škunca N, Dessimoz C. Phylogenetic profiling: how much input data is enough? Plos One. 10: e0114701. PMID 25679783 DOI: 10.1371/Journal.Pone.0114701 |
0.767 |
|
| 2015 |
Altenhoff AM, Škunca N, Glover N, Train CM, Sueki A, Piližota I, Gori K, Tomiczek B, Müller S, Redestig H, Gonnet GH, Dessimoz C. The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements. Nucleic Acids Research. 43: D240-9. PMID 25399418 DOI: 10.1093/Nar/Gku1158 |
0.673 |
|
| 2015 |
Altenhoff A, Škunca N, Glover N, Train C, Sueki A, Piližota I, Gori K, Tomiczek B, Müller S, Redestig H, Gonnet G, Dessimoz C. The OMA orthology database in 2015 F1000research. 6. DOI: 10.7490/F1000Research.1098334.1 |
0.721 |
|
| 2015 |
Škunca N, Dessimoz C. Phylogenetic profiling: How much input data is enough? Plos One. 10. DOI: 10.1371/journal.pone.0114701 |
0.667 |
|
| 2015 |
Ravenhall M, Škunca N, Lassalle F, Dessimoz C. Inferring Horizontal Gene Transfer Plos Computational Biology. 11. DOI: 10.1371/journal.pcbi.1004095 |
0.676 |
|
| 2014 |
Peng X, Alföldi J, Gori K, Eisfeld AJ, Tyler SR, Tisoncik-Go J, Brawand D, Law GL, Skunca N, Hatta M, Gasper DJ, Kelly SM, Chang J, Thomas MJ, Johnson J, et al. The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease. Nature Biotechnology. 32: 1250-5. PMID 25402615 DOI: 10.1038/Nbt.3079 |
0.678 |
|
| 2014 |
Škunca N, Dessimoz C. Post-modern function annotation F1000research. 5. DOI: 10.7490/F1000Research.1095206.1 |
0.699 |
|
| 2013 |
Dessimoz C, Škunca N, Thomas PD. CAFA and the Open World of protein function predictions Trends in Genetics. 29: 609-610. PMID 24138813 DOI: 10.1016/J.Tig.2013.09.005 |
0.746 |
|
| 2013 |
Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, ... ... Škunca N, et al. A large-scale evaluation of computational protein function prediction. Nature Methods. 10: 221-7. PMID 23353650 DOI: 10.1038/Nmeth.2340 |
0.437 |
|
| 2013 |
Škunca N, Bošnjak M, Kriško A, Panov P, Džeroski S, Šmuc T, Supek F. Phyletic Profiling with Cliques of Orthologs Is Enhanced by Signatures of Paralogy Relationships Plos Computational Biology. 9. PMID 23308060 DOI: 10.1371/Journal.Pcbi.1002852 |
0.491 |
|
| 2012 |
Škunca N, Altenhoff A, Dessimoz C. Quality of computationally inferred gene ontology annotations Plos Computational Biology. 8. PMID 22693439 DOI: 10.1371/Journal.Pcbi.1002533 |
0.742 |
|
| 2011 |
Supek F, Bošnjak M, Škunca N, Šmuc T. REVIGO summarizes and visualizes long lists of gene ontology terms. Plos One. 6: e21800. PMID 21789182 DOI: 10.1371/Journal.Pone.0021800 |
0.372 |
|
| 2011 |
du Plessis L, Škunca N, Dessimoz C. The what, where, how and why of gene ontology-A primer for bioinformaticians Briefings in Bioinformatics. 12: 723-735. PMID 21330331 DOI: 10.1093/Bib/Bbr002 |
0.734 |
|
| 2010 |
Supek F, Skunca N, Repar J, Vlahovicek K, Smuc T. Translational selection is ubiquitous in prokaryotes. Plos Genetics. 6: e1001004. PMID 20585573 DOI: 10.1371/Journal.Pgen.1001004 |
0.482 |
|
| 2007 |
Zucko J, Skunca N, Curk T, Zupan B, Long PF, Cullum J, Kessin RH, Hranueli D. Polyketide synthase genes and the natural products potential of Dictyostelium discoideum. Bioinformatics (Oxford, England). 23: 2543-9. PMID 17660200 DOI: 10.1093/Bioinformatics/Btm381 |
0.397 |
|
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