| Year |
Citation |
Score |
| 2023 |
Fitz-Gibbon S, Mead A, O'Donnell S, Li ZZ, Escalona M, Beraut E, Sacco S, Marimuthu MPA, Nguyen O, Sork VL. Reference genome of California walnut, Juglans californica, and resemblance with other genomes in the order Fagales. The Journal of Heredity. PMID 37335172 DOI: 10.1093/jhered/esad036 |
0.343 |
|
| 2022 |
Turba R, Richmond JQ, Fitz-Gibbon S, Morselli M, Fisher RN, Swift CC, Ruiz-Campos G, Backlin AR, Dellith C, Jacobs DK. Genetic structure and historic demography of endangered unarmored threespine stickleback at southern latitudes signals a potential new management approach. Molecular Ecology. PMID 36205603 DOI: 10.1111/mec.16722 |
0.474 |
|
| 2022 |
Sork VL, Cokus SJ, Fitz-Gibbon ST, Zimin AV, Puiu D, Garcia JA, Gugger PF, Henriquez CL, Zhen Y, Lohmueller KE, Pellegrini M, Salzberg SL. High-quality genome and methylomes illustrate features underlying evolutionary success of oaks. Nature Communications. 13: 2047. PMID 35440538 DOI: 10.1038/s41467-022-29584-y |
0.358 |
|
| 2019 |
Browne L, Wright JW, Fitz-Gibbon S, Gugger PF, Sork VL. Adaptational lag to temperature in valley oak () can be mitigated by genome-informed assisted gene flow. Proceedings of the National Academy of Sciences of the United States of America. PMID 31767740 DOI: 10.1073/Pnas.1908771116 |
0.332 |
|
| 2019 |
Hipp AL, Manos PS, Hahn M, Avishai M, Bodénès C, Cavender-Bares J, Crowl AA, Deng M, Denk T, Fitz-Gibbon S, Gailing O, González-Elizondo MS, González-Rodríguez A, Grimm GW, Jiang XL, et al. Genomic landscape of the global oak phylogeny. The New Phytologist. PMID 31609470 DOI: 10.1111/Nph.16162 |
0.478 |
|
| 2018 |
Oney-Birol S, Fitz-Gibbon S, Chen JM, Gugger PF, Sork VL. Assessment of shared alleles in drought-associated candidate genes among southern California white oak species (Quercus sect. Quercus). Bmc Genetics. 19: 88. PMID 30285631 DOI: 10.1186/S12863-018-0677-9 |
0.351 |
|
| 2018 |
Kuo CY, Long JD, Campo-Fernandez B, de Oliveira S, Cooper AR, Romero Z, Hoban MD, Joglekar AV, Lill GR, Kaufman ML, Fitz-Gibbon S, Wang X, Hollis RP, Kohn DB. Site-Specific Gene Editing of Human Hematopoietic Stem Cells for X-Linked Hyper-IgM Syndrome. Cell Reports. 23: 2606-2616. PMID 29847792 DOI: 10.1016/J.Celrep.2018.04.103 |
0.336 |
|
| 2017 |
Gallaher SD, Fitz-Gibbon ST, Strenkert D, Purvine SO, Pellegrini M, Merchant SS. High-throughput sequencing of the chloroplast and mitochondrion of Chlamydomonas reinhardtii to generate improved de novo assemblies, analyze expression patterns and transcript speciation, and evaluate diversity among laboratory strains and wild isolates. The Plant Journal : For Cell and Molecular Biology. PMID 29172250 DOI: 10.1111/Tpj.13788 |
0.394 |
|
| 2017 |
Fitz-Gibbon S, Hipp AL, Pham KK, Manos PS, Sork V. Phylogenomic inferences from reference-mapped and de novo assembled short-read sequence data using RADseq sequencing of California white oaks (Quercus/i> subgenus Quercus). Genome. PMID 28355490 DOI: 10.1139/Gen-2016-0202 |
0.452 |
|
| 2016 |
Sork VL, Fitz-Gibbon ST, Puiu D, Crepeau M, Gugger PF, Sherman R, Stevens K, Langley CH, Pellegrini M, Salzberg SL. First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Née (Fagaceae). G3 (Bethesda, Md.). PMID 27621377 DOI: 10.1534/G3.116.030411 |
0.38 |
|
| 2016 |
Hoban MD, Lumaquin D, Kuo CY, Romero Z, Long J, Ho M, Young CS, Mojadidi M, Fitz-Gibbon S, Cooper AR, Lill GR, Urbinati F, Campo-Fernandez B, Bjurstrom CF, Pellegrini M, et al. CRISPR/Cas9-mediated correction of the sickle mutation in human CD34+ cells. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 27406980 DOI: 10.1038/Mt.2016.148 |
0.306 |
|
| 2016 |
Gugger PF, Fitz-Gibbon S, Pellegrini M, Sork VL. Species-wide patterns of DNA methylation variation in Quercus lobata and its association with climate gradients. Molecular Ecology. PMID 26833902 DOI: 10.1111/Mec.13563 |
0.36 |
|
| 2016 |
Bjurström CF, Mojadidi M, Lomova A, Lai S, Fitz-Gibbon S, Pellegrini M, Cooper AR, Lill GR, Kaufman M, Cost GJ, Holmes MC, Hollis RP, Kohn DB. Preservation of Gene Edited Hematopoietic Stem Cells By Transient Overexpression of BCL-2 mRNA Blood. 128: 3636-3636. DOI: 10.1182/Blood.V128.22.3636.3636 |
0.322 |
|
| 2014 |
House CH, Pellegrini M, Fitz-Gibbon ST. Genome-wide gene order distances support clustering the gram-positive bacteria. Frontiers in Microbiology. 5: 785. PMID 25653643 DOI: 10.3389/Fmicb.2014.00785 |
0.62 |
|
| 2013 |
Kasimatis G, Fitz-Gibbon S, Tomida S, Wong M, Li H. Analysis of complete genomes of Propionibacterium acnes reveals a novel plasmid and increased pseudogenes in an acne associated strain. Biomed Research International. 2013: 918320. PMID 23762865 DOI: 10.1155/2013/918320 |
0.415 |
|
| 2012 |
Marinelli LJ, Fitz-Gibbon S, Hayes C, Bowman C, Inkeles M, Loncaric A, Russell DA, Jacobs-Sera D, Cokus S, Pellegrini M, Kim J, Miller JF, Hatfull GF, Modlin RL. Propionibacterium acnes bacteriophages display limited genetic diversity and broad killing activity against bacterial skin isolates. Mbio. 3. PMID 23015740 DOI: 10.1128/Mbio.00279-12 |
0.427 |
|
| 2010 |
Rhodes ME, Fitz-Gibbon ST, Oren A, House CH. Amino acid signatures of salinity on an environmental scale with a focus on the Dead Sea Environmental Microbiology. 12: 2613-2623. PMID 20482588 DOI: 10.1111/J.1462-2920.2010.02232.X |
0.574 |
|
| 2008 |
Biddle JF, Fitz-Gibbon S, Schuster SC, Brenchley JE, House CH. Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment Proceedings of the National Academy of Sciences of the United States of America. 105: 10583-10588. PMID 18650394 DOI: 10.1073/Pnas.0709942105 |
0.617 |
|
| 2005 |
Jacobs DK, Hughes NC, Fitz-Gibbon ST, Winchell CJ. Terminal addition, the Cambrian radiation and the Phanerozoic evolution of bilaterian form. Evolution & Development. 7: 498-514. PMID 16336405 DOI: 10.1111/J.1525-142X.2005.05055.X |
0.481 |
|
| 2005 |
Robbins JB, McKinney MC, Guzman CE, Sriratana B, Fitz-Gibbon S, Ha T, Cann IK. The euryarchaeota, nature's medium for engineering of single-stranded DNA-binding proteins. The Journal of Biological Chemistry. 280: 15325-39. PMID 15671019 DOI: 10.1074/Jbc.M412870200 |
0.356 |
|
| 2003 |
House CH, Runnegar B, Fitz-Gibbon ST. Geobiological analysis using whole genome-based tree building applied to the Bacteria, Archaea, and Eukarya Geobiology. 1: 15-26. DOI: 10.1046/J.1472-4669.2003.00004.X |
0.719 |
|
| 2002 |
Sartori AA, Fitz-Gibbon S, Yang H, Miller JH, Jiricny J. A novel uracil-DNA glycosylase with broad substrate specificity and an unusual active site. The Embo Journal. 21: 3182-91. PMID 12065430 DOI: 10.1093/emboj/cdf309 |
0.472 |
|
| 2002 |
House CH, Fitz-Gibbon ST. Using homolog groups to create a whole-genomic tree of free-living organisms: An update Journal of Molecular Evolution. 54: 539-547. PMID 11956692 DOI: 10.1007/S00239-001-0054-5 |
0.654 |
|
| 2002 |
Yang H, Chiang JH, Fitz-Gibbon S, Lebel M, Sartori AA, Jiricny J, Slupska MM, Miller JH. Direct interaction between uracil-DNA glycosylase and a proliferating cell nuclear antigen homolog in the crenarchaeon Pyrobaculum aerophilum. The Journal of Biological Chemistry. 277: 22271-8. PMID 11927597 DOI: 10.1074/Jbc.M201820200 |
0.546 |
|
| 2002 |
Fitz-Gibbon ST, Ladner H, Kim UJ, Stetter KO, Simon MI, Miller JH. Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum. Proceedings of the National Academy of Sciences of the United States of America. 99: 984-9. PMID 11792869 DOI: 10.1073/pnas.241636498 |
0.586 |
|
| 2001 |
Sartori AA, Schär P, Fitz-Gibbon S, Miller JH, Jiricny J. Biochemical characterization of uracil processing activities in the hyperthermophilic archaeon Pyrobaculum aerophilum. The Journal of Biological Chemistry. 276: 29979-86. PMID 11399761 DOI: 10.1074/Jbc.M102985200 |
0.558 |
|
| 2001 |
Slupska MM, King AG, Fitz-Gibbon S, Besemer J, Borodovsky M, Miller JH. Leaderless transcripts of the crenarchaeal hyperthermophile Pyrobaculum aerophilum. Journal of Molecular Biology. 309: 347-60. PMID 11371158 DOI: 10.1006/Jmbi.2001.4669 |
0.599 |
|
| 2000 |
Yang H, Slupska MM, Wei YF, Tai JH, Luther WM, Xia YR, Shih DM, Chiang JH, Baikalov C, Fitz-Gibbon S, Phan IT, Conrad A, Miller JH. Cloning and characterization of a new member of the Nudix hydrolases from human and mouse. The Journal of Biological Chemistry. 275: 8844-53. PMID 10722730 DOI: 10.1074/Jbc.275.12.8844 |
0.573 |
|
| 2000 |
Mallick P, Goodwill KE, Fitz-Gibbon S, Miller JH, Eisenberg D. Selecting protein targets for structural genomics of Pyrobaculum aerophilum: validating automated fold assignment methods by using binary hypothesis testing. Proceedings of the National Academy of Sciences of the United States of America. 97: 2450-5. PMID 10706641 DOI: 10.1073/Pnas.050589297 |
0.579 |
|
| 2000 |
Yang H, Fitz-Gibbon S, Marcotte EM, Tai JH, Hyman EC, Miller JH. Characterization of a thermostable DNA glycosylase specific for U/G and T/G mismatches from the hyperthermophilic archaeon Pyrobaculum aerophilum. Journal of Bacteriology. 182: 1272-9. PMID 10671447 DOI: 10.1128/Jb.182.5.1272-1279.2000 |
0.588 |
|
| 1999 |
Drozdowicz YM, Lu YP, Patel V, Fitz-Gibbon S, Miller JH, Rea PA. A thermostable vacuolar-type membrane pyrophosphatase from the archaeon Pyrobaculum aerophilum: implications for the origins of pyrophosphate-energized pumps. Febs Letters. 460: 505-12. PMID 10556526 DOI: 10.1016/S0014-5793(99)01404-0 |
0.526 |
|
| 1997 |
Fitz-Gibbon S, Choi AJ, Miller JH, Stetter KO, Simon MI, Swanson R, Kim UJ. A fosmid-based genomic map and identification of 474 genes of the hyperthermophilic archaeon Pyrobaculum aerophilum. Extremophiles : Life Under Extreme Conditions. 1: 36-51. PMID 9680335 DOI: 10.1007/S007920050013 |
0.629 |
|
| 1996 |
Völkl P, Markiewicz P, Baikalov C, Fitz-Gibbon S, Stetter KO, Miller JH. Genomic and cDNA sequence tags of the hyperthermophilic archaeon Pyrobaculum aerophilum. Nucleic Acids Research. 24: 4373-8. PMID 8948626 DOI: 10.1093/Nar/24.22.4373 |
0.648 |
|
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