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Zev J. Gartner, Ph.D. - Publications

Affiliations: 
Pharmaceutical Chemistry University of California, San Francisco, San Francisco, CA 
Area:
Chemical Biology, Tissue Engineering, Synthetic Biology
Website:
http://www.gartnerlab.ucsf.edu
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67 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Kwak M, Southard KM, Kim WR, Lin A, Kim NH, Gopalappa R, Lee HJ, An M, Choi SH, Jung Y, Noh K, Farlow J, Georgakopoulos A, Robakis NK, Kang MK, ... ... Gartner ZJ, et al. Adherens junctions organize size-selective proteolytic hotspots critical for Notch signalling. Nature Cell Biology. PMID 36456828 DOI: 10.1038/s41556-022-01031-6  0.783
2022 Louis B, Tewary M, Bremer AW, Philippeos C, Negri VA, Zijl S, Gartner ZJ, Schaffer DV, Watt FM. A reductionist approach to determine the effect of cell-cell contact on human epidermal stem cell differentiation. Acta Biomaterialia. PMID 35926780 DOI: 10.1016/j.actbio.2022.07.054  0.313
2022 Yang D, Jones MG, Naranjo S, Rideout WM, Min KHJ, Ho R, Wu W, Replogle JM, Page JL, Quinn JJ, Horns F, Qiu X, Chen MZ, Freed-Pastor WA, McGinnis CS, ... ... Gartner ZJ, et al. Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution. Cell. PMID 35523183 DOI: 10.1016/j.cell.2022.04.015  0.51
2022 Kim SC, Haliburton JR, Gartner ZJ, Abate AR. Single-Cell Protein Profiling by Microdroplet Barcoding and Next-Generation Sequencing. Methods in Molecular Biology (Clifton, N.J.). 2386: 101-111. PMID 34766267 DOI: 10.1007/978-1-0716-1771-7_7  0.303
2021 Kindberg AA, Srivastava V, Muncie JM, Weaver VM, Gartner ZJ, Bush JO. EPH/EPHRIN regulates cellular organization by actomyosin contractility effects on cell contacts. The Journal of Cell Biology. 220. PMID 33798261 DOI: 10.1083/jcb.202005216  0.314
2021 Cabral KA, Patterson DM, Scheideler OJ, Cole R, Abate AR, Schaffer DV, Sohn LL, Gartner ZJ. Simple, Affordable, and Modular Patterning of Cells using DNA. Journal of Visualized Experiments : Jove. PMID 33720126 DOI: 10.3791/61937  0.644
2020 Hu KH, Eichorst JP, McGinnis CS, Patterson DM, Chow ED, Kersten K, Jameson SC, Gartner ZJ, Rao AA, Krummel MF. ZipSeq: barcoding for real-time mapping of single cell transcriptomes. Nature Methods. PMID 32632238 DOI: 10.1038/S41592-020-0880-2  0.617
2020 Srivastava V, Huycke TR, Phong KT, Gartner ZJ. Organoid models for mammary gland dynamics and breast cancer. Current Opinion in Cell Biology. 66: 51-58. PMID 32535255 DOI: 10.1016/J.Ceb.2020.05.003  0.316
2020 Zhang JQ, Siltanen CA, Liu L, Chang KC, Gartner ZJ, Abate AR. Linked optical and gene expression profiling of single cells at high-throughput. Genome Biology. 21: 49. PMID 32093753 DOI: 10.1186/S13059-020-01958-9  0.357
2020 Creasey OA, Sneddon JB, Gartner ZJ. 2063-P: Quantitative Analysis of Human and Mouse Islet Tissue Structure Diabetes. 69. DOI: 10.2337/Db20-2063-P  0.386
2020 Winkler J, Tan W, McGinnis C, Gartner Z, Darmanis S, Werb Z. Abstract 351: Alterations in immune cell signatures during breast cancer metastasis at single cell resolution Cancer Research. 80: 351-351. DOI: 10.1158/1538-7445.Am2020-351  0.318
2019 Murrow LM, Gartner ZJ. Balancing Act: Cell Polarity and Shape Compete to Ensure Robust Development. Developmental Cell. 51: 545-547. PMID 31794715 DOI: 10.1016/J.Devcel.2019.11.008  0.371
2019 Harel ET, Drake PM, Barfield RM, Lui I, Farr-Jones S, Van't Veer L, Gartner ZJ, Green EM, Lourenço AL, Cheng Y, Hann BC, Rabuka D, Craik CS. Antibody-Drug Conjugates Targeting the Urokinase Receptor (uPAR) as a Possible Treatment of Aggressive Breast Cancer. Antibodies (Basel, Switzerland). 8. PMID 31694242 DOI: 10.3390/Antib8040054  0.641
2019 Gartner Z, Hughes A. Getting the measure of living biomaterials. Nature. 572: 38-39. PMID 31358937 DOI: 10.1038/D41586-019-02263-7  0.323
2019 McGinnis CS, Patterson DM, Winkler J, Conrad DN, Hein MY, Srivastava V, Hu JL, Murrow LM, Weissman JS, Werb Z, Chow ED, Gartner ZJ. MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices. Nature Methods. PMID 31209384 DOI: 10.1038/S41592-019-0433-8  0.604
2019 McGinnis CS, Murrow LM, Gartner ZJ. DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors. Cell Systems. PMID 30954475 DOI: 10.1016/J.Cels.2019.03.003  0.358
2019 CREASEY OA, ELNATAN D, SNEDDON JB, GARTNER ZJ. 2151-P: Quantification of Tissue Structure in Human and Mouse Islets Diabetes. 68: 2151-P. DOI: 10.2337/Db19-2151-P  0.382
2018 Gruber TD, Krishnamurthy C, Grimm JB, Tadross MR, Wysocki LM, Gartner ZJ, Lavis LD. Cell-Specific Chemical Delivery Using a Selective Nitroreductase-Nitroaryl Pair. Acs Chemical Biology. PMID 30111097 DOI: 10.1021/Acschembio.8B00524  0.359
2018 Siltanen CA, Cole RH, Poust S, Chao L, Tyerman J, Kaufmann-Malaga B, Ubersax J, Gartner ZJ, Abate AR. An Oil-Free Picodrop Bioassay Platform for Synthetic Biology. Scientific Reports. 8: 7913. PMID 29784937 DOI: 10.1038/S41598-018-25577-4  0.309
2018 Kim J, Han S, Lei A, Miyano M, Bloom J, Srivastava V, Stampfer MM, Gartner ZJ, LaBarge MA, Sohn LL. Characterizing cellular mechanical phenotypes with mechano-node-pore sensing. Microsystems & Nanoengineering. 4. PMID 29780657 DOI: 10.1038/Micronano.2017.91  0.372
2018 Liang SI, van Lengerich B, Eichel K, Cha M, Patterson DM, Yoon TY, von Zastrow M, Jura N, Gartner ZJ. Phosphorylated EGFR Dimers Are Not Sufficient to Activate Ras. Cell Reports. 22: 2593-2600. PMID 29514089 DOI: 10.1016/J.Celrep.2018.02.031  0.539
2017 Hughes AJ, Miyazaki H, Coyle MC, Zhang J, Laurie MT, Chu D, Vavrušová Z, Schneider RA, Klein OD, Gartner ZJ. Engineered Tissue Folding by Mechanical Compaction of the Mesenchyme. Developmental Cell. PMID 29290586 DOI: 10.1016/J.Devcel.2017.12.004  0.374
2017 Hu JL, Todhunter ME, LaBarge MA, Gartner ZJ. Opportunities for organoids as new models of aging. The Journal of Cell Biology. PMID 29263081 DOI: 10.1083/Jcb.201709054  0.302
2017 Kim JW, Seo D, Lee JU, Southard KM, Lim Y, Kim D, Gartner ZJ, Jun YW, Cheon J. Single-cell mechanogenetics using monovalent magnetoplasmonic nanoparticles. Nature Protocols. 12: 1871-1889. PMID 28817122 DOI: 10.1038/Nprot.2017.071  0.421
2017 Cole RH, Tang SY, Siltanen CA, Shahi P, Zhang JQ, Poust S, Gartner ZJ, Abate AR. Printed droplet microfluidics for on demand dispensing of picoliter droplets and cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 28760972 DOI: 10.1073/Pnas.1704020114  0.399
2017 Seo D, Southard KM, Kim JW, Lee HJ, Farlow J, Lee JU, Litt DB, Haas T, Alivisatos AP, Cheon J, Gartner ZJ, Jun YW. A Mechanogenetic Toolkit for Interrogating Cell Signaling in Space and Time. Cell. 169: 1357. PMID 28622515 DOI: 10.1016/J.Cell.2017.06.005  0.767
2017 Gartner ZJ, Prescher JA, Lavis LD. Unraveling cell-to-cell signaling networks with chemical biology. Nature Chemical Biology. 13: 564-568. PMID 28514428 DOI: 10.1038/Nchembio.2391  0.662
2017 Taylor MJ, Husain K, Gartner ZJ, Mayor S, Vale RD. A DNA-Based T Cell Receptor Reveals a Role for Receptor Clustering in Ligand Discrimination. Cell. 169: 108-119.e20. PMID 28340336 DOI: 10.1016/J.Cell.2017.03.006  0.354
2017 Weber RJ, Desai TA, Gartner ZJ. Non-autonomous cell proliferation in the mammary gland and cancer. Current Opinion in Cell Biology. 45: 55-61. PMID 28314237 DOI: 10.1016/J.Ceb.2017.02.009  0.378
2017 Murrow LM, Weber RJ, Gartner ZJ. Dissecting the stem cell niche with organoid models: an engineering-based approach. Development (Cambridge, England). 144: 998-1007. PMID 28292846 DOI: 10.1242/Dev.140905  0.368
2017 Shahi P, Kim SC, Haliburton JR, Gartner ZJ, Abate AR. Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding. Scientific Reports. 7: 44447. PMID 28290550 DOI: 10.1038/Srep44447  0.396
2016 Weber RJ, Cerchiari AE, Delannoy LS, Garbe JC, LaBarge MA, Desai TA, Gartner ZJ. Rapid Organoid Reconstitution by Chemical Micromolding. Acs Biomaterials Science & Engineering. 2: 1851-1855. PMID 33440521 DOI: 10.1021/acsbiomaterials.6b00421  0.798
2016 Ouyang A, Cerchiari AE, Tang X, Liebenberg E, Alliston T, Gartner ZJ, Lotz JC. Effects of cell type and configuration on anabolic and catabolic activity in 3D coculture of mesenchymal stem cells and nucleus pulposus cells. Journal of Orthopaedic Research : Official Publication of the Orthopaedic Research Society. PMID 27699833 DOI: 10.1002/Jor.23452  0.78
2016 Todhunter ME, Weber RJ, Farlow J, Jee NY, Cerchiari AE, Gartner ZJ. Fabrication of 3-D Reconstituted Organoid Arrays by DNA-Programmed Assembly of Cells (DPAC). Current Protocols in Chemical Biology. 8: 147-78. PMID 27622567 DOI: 10.1002/Cpch.8  0.798
2016 Cerchiari AE, Samy KE, Todhunter ME, Schlesinger E, Henise J, Rieken C, Gartner ZJ, Desai TA. Probing the luminal microenvironment of reconstituted epithelial microtissues. Scientific Reports. 6: 33148. PMID 27619235 DOI: 10.1038/Srep33148  0.774
2016 Seo D, Southard KM, Kim JW, Lee HJ, Farlow J, Lee JU, Litt DB, Haas T, Alivisatos AP, Cheon J, Gartner ZJ, Jun YW. A Mechanogenetic Toolkit for Interrogating Cell Signaling in Space and Time. Cell. PMID 27180907 DOI: 10.1016/J.Cell.2016.04.045  0.789
2016 Chen S, Bremer AW, Scheideler OJ, Na YS, Todhunter ME, Hsiao S, Bomdica PR, Maharbiz MM, Gartner ZJ, Schaffer DV. Interrogating cellular fate decisions with high-throughput arrays of multiplexed cellular communities. Nature Communications. 7: 10309. PMID 26754526 DOI: 10.1038/Ncomms10309  0.414
2016 Weber RJ, Cerchiari AE, Delannoy LS, Garbe JC, LaBarge MA, Desai TA, Gartner ZJ. Rapid Organoid Reconstitution by Chemical Micromolding Acs Biomaterials Science & Engineering. 2: 1851-1855. DOI: 10.1021/Acsbiomaterials.6B00421  0.8
2015 Broaders KE, Cerchiari AE, Gartner ZJ. Coupling between apical tension and basal adhesion allow epithelia to collectively sense and respond to substrate topography over long distances. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 26507156 DOI: 10.1039/C5Ib00240K  0.784
2015 Todhunter ME, Jee NY, Hughes AJ, Coyle MC, Cerchiari A, Farlow J, Garbe JC, LaBarge MA, Desai TA, Gartner ZJ. Programmed synthesis of three-dimensional tissues. Nature Methods. 12: 975-81. PMID 26322836 DOI: 10.1038/Nmeth.3553  0.805
2015 Cerchiari AE, Garbe JC, Jee NY, Todhunter ME, Broaders KE, Peehl DM, Desai TA, LaBarge MA, Thomson M, Gartner ZJ. A strategy for tissue self-organization that is robust to cellular heterogeneity and plasticity. Proceedings of the National Academy of Sciences of the United States of America. 112: 2287-92. PMID 25633040 DOI: 10.1073/Pnas.1410776112  0.79
2015 Cerchiari A, Garbe JC, Todhunter ME, Jee NY, Pinney JR, LaBarge MA, Desai TA, Gartner ZJ. Formation of spatially and geometrically controlled three-dimensional tissues in soft gels by sacrificial micromolding. Tissue Engineering. Part C, Methods. 21: 541-7. PMID 25351430 DOI: 10.1089/Ten.Tec.2014.0450  0.798
2015 Cerchiari A, Garbe JC, Todhunter ME, Jee NY, Pinney JR, LaBarge MA, Desai TA, Gartner ZJ. Formation of Spatially and Geometrically Controlled Three-Dimensional Tissues in Soft Gels by Sacrificial Micromolding Tissue Engineering - Part C: Methods. 21: 541-547. DOI: 10.1089/ten.tec.2014.0450  0.751
2015 Cerchiari AE, Garbe JC, Jee NY, Todhunter ME, Broaders KE, Peehl DM, Desai TA, LaBarge MA, Thomsonf M, Gartner ZJ. A strategy for tissue self-organization that is robust to cellular heterogeneity and plasticity Proceedings of the National Academy of Sciences of the United States of America. 112: 2287-2292. DOI: 10.1073/pnas.1410776112  0.764
2014 Seo D, Farlow J, Southard K, Jun YW, Gartner ZJ. Production and targeting of monovalent quantum dots. Journal of Visualized Experiments : Jove. e52198. PMID 25407345 DOI: 10.3791/52198  0.78
2014 Weber RJ, Liang SI, Selden NS, Desai TA, Gartner ZJ. Efficient targeting of fatty-acid modified oligonucleotides to live cell membranes through stepwise assembly. Biomacromolecules. 15: 4621-6. PMID 25325667 DOI: 10.1021/Bm501467H  0.334
2014 Liang SI, McFarland JM, Rabuka D, Gartner ZJ. A modular approach for assembling aldehyde-tagged proteins on DNA scaffolds. Journal of the American Chemical Society. 136: 10850-3. PMID 25029632 DOI: 10.1021/Ja504711N  0.711
2014 Rosenblatt J, Gartner Z. Cells: Shaping tissues and organs Molecular Biology of the Cell. 25: 730. PMID 24626844 DOI: 10.1091/Mbc.E13-11-0670  0.418
2014 Seo D, Kim J, Farlow J, Lee H, Alivisatos P, Cheon J, Gartner Z, Jun Y. Regulating Spatiotemporal Dynamics of Notch Signaling in Live Cells via Magnetoplasmonic Nanoprobes Biophysical Journal. 106: 224a. DOI: 10.1016/J.Bpj.2013.11.1314  0.79
2013 Farlow J, Seo D, Broaders KE, Taylor MJ, Gartner ZJ, Jun YW. Formation of targeted monovalent quantum dots by steric exclusion Nature Methods. 10: 1203-1205. PMID 24122039 DOI: 10.1038/Nmeth.2682  0.746
2013 Sogi KM, Gartner ZJ, Breidenbach MA, Appel MJ, Schelle MW, Bertozzi CR. Mycobacterium tuberculosis Rv3406 is a type II alkyl sulfatase capable of sulfate scavenging. Plos One. 8: e65080. PMID 23762287 DOI: 10.1371/Journal.Pone.0065080  0.728
2012 Liu JS, Gartner ZJ. Directing the assembly of spatially organized multicomponent tissues from the bottom up. Trends in Cell Biology. 22: 683-91. PMID 23067679 DOI: 10.1016/J.Tcb.2012.09.004  0.593
2012 Liu JS, Farlow JT, Paulson AK, Labarge MA, Gartner ZJ. Programmed cell-to-cell variability in Ras activity triggers emergent behaviors during mammary epithelial morphogenesis. Cell Reports. 2: 1461-70. PMID 23041312 DOI: 10.1016/J.Celrep.2012.08.037  0.777
2012 Onoe H, Hsiao SC, Douglas ES, Gartner ZJ, Bertozzi CR, Francis MB, Mathies RA. Cellular microfabrication: observing intercellular interactions using lithographically-defined DNA capture sequences. Langmuir : the Acs Journal of Surfaces and Colloids. 28: 8120-6. PMID 22512362 DOI: 10.1021/La204863S  0.592
2012 Selden NS, Todhunter ME, Jee NY, Liu JS, Broaders KE, Gartner ZJ. Chemically programmed cell adhesion with membrane-anchored oligonucleotides. Journal of the American Chemical Society. 134: 765-8. PMID 22176556 DOI: 10.1021/Ja2080949  0.807
2009 Hsiao SC, Shum BJ, Onoe H, Douglas ES, Gartner ZJ, Mathies RA, Bertozzi CR, Francis MB. Direct cell surface modification with DNA for the capture of primary cells and the investigation of myotube formation on defined patterns. Langmuir : the Acs Journal of Surfaces and Colloids. 25: 6985-91. PMID 19505164 DOI: 10.1021/La900150N  0.59
2009 Gartner ZJ, Bertozzi CR. Programmed assembly of 3-dimensional microtissues with defined cellular connectivity. Proceedings of the National Academy of Sciences of the United States of America. 106: 4606-10. PMID 19273855 DOI: 10.1073/Pnas.0900717106  0.602
2009 Chen X, Wu P, Rousseas M, Okawa D, Gartner Z, Zettl A, Bertozzi CR. Boron nitride nanotubes are noncytotoxic and can be functionalized for interaction with proteins and cells. Journal of the American Chemical Society. 131: 890-1. PMID 19119844 DOI: 10.1021/Ja807334B  0.643
2006 Gartner ZJ. Evolutionary approaches for the discovery of functional synthetic small molecules Pure and Applied Chemistry. 78: 1-14. DOI: 10.1351/Pac200678010001  0.353
2004 Gartner ZJ, Tse BN, Grubina R, Doyon JB, Snyder TM, Liu DR. DNA-templated organic synthesis and selection of a library of macrocycles Science. 305: 1601-1605. PMID 15319493 DOI: 10.1126/Science.1102629  0.759
2004 Buskirk AR, Ong YC, Gartner ZJ, Liu DR. Directed evolution of ligand dependence: Small-molecule-activated protein splicing Proceedings of the National Academy of Sciences of the United States of America. 101: 10505-10510. PMID 15247421 DOI: 10.1073/Pnas.0402762101  0.729
2004 Li X, Gartner ZJ, Tse BN, Liu DR. Translation of DNA into Synthetic N-Acyloxazolidines Journal of the American Chemical Society. 126: 5090-5092. PMID 15099091 DOI: 10.1021/Ja049666+  0.788
2003 Gartner ZJ, Grubina R, Calderone CT, Liu DR. Two enabling architectures for DNA-templated organic synthesis Angewandte Chemie - International Edition. 42: 1370-1375. PMID 12671971 DOI: 10.1002/Anie.200390351  0.788
2002 Gartner ZJ, Kanan MW, Liu DR. Expanding the reaction scope of DNA-templated synthesis. Angewandte Chemie (International Ed. in English). 41: 1796-800. PMID 19750721 DOI: 10.1002/1521-3773(20020517)41:10<1796::Aid-Anie1796>3.0.Co;2-Z  0.717
2002 Calderone CT, Puckett JW, Gartner ZJ, Liu DR. Directing otherwise incompatible reactions in a single solution by using DNA-templated organic synthesis Angewandte Chemie - International Edition. 41: 4104-4108. PMID 12412096 DOI: 10.1002/1521-3773(20021104)41:21<4104::Aid-Anie4104>3.0.Co;2-O  0.78
2002 Gartner ZJ, Kanan MW, Liu DR. Multistep small-molecule synthesis programmed by DNA templates. Journal of the American Chemical Society. 124: 10304-6. PMID 12197733 DOI: 10.1021/Ja027307D  0.718
2001 Gartner ZJ, Liu DR. The generality of DNA-templated synthesis as a basis for evolving non-natural small molecules Journal of the American Chemical Society. 123: 6961-6963. PMID 11448217 DOI: 10.1021/Ja015873N  0.428
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