Pengyu Ren

Affiliations: 
2015- Biomedical Engineering University of Texas at Austin, Austin, Texas, U.S.A. 
Website:
https://oden.utexas.edu/people/directory/Pengyu-Ren/
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"Pengyu Ren"
Bio:

https://www.proquest.com/openview/52ee18414254058a53221aa151284ee7/1

Mean distance: 10.81
 

Parents

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Joel R. Fried grad student 1999 University of Cincinnati
 (Atomistic simulation of gas transport in polyphosphazenes)
Jay W. Ponder post-doc Washington University Medical School (Physics Tree)

Children

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Zhifeng Jing grad student 2015- UT Austin
Dian Jiao grad student 2009 UT Austin
Brandon D Walker grad student 2017-2022 UT Austin
Chengwen Liu post-doc 2015- UT Austin
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Publications

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Schahl A, Lagardère L, Walker B, et al. (2025) Histidine 73 methylation coordinates β-actin plasticity in response to key environmental factors. Nature Communications. 16: 2304
Blazhynska M, Lagardère L, Liu C, et al. (2024) Water-glycan interactions drive the SARS-CoV-2 spike dynamics: insights into glycan-gate control and camouflage mechanisms. Chemical Science
Tarek Ibrahim M, Wait E, Ren P. (2024) Quantum Mechanics Characterization of Non-Covalent Interaction in Nucleotide Fragments. Molecules (Basel, Switzerland). 29
Gogal RA, Nessler AJ, Thiel AC, et al. (2024) Force Field X: A computational microscope to study genetic variation and organic crystals using theory and experiment. The Journal of Chemical Physics. 161
Yang X, Liu C, Ren P. (2024) Exploring Biomolecular Conformational Dynamics with Polarizable Force Field AMOEBA and Enhanced Sampling Method Milestoning. Journal of Chemical Theory and Computation
Thiel AC, Speranza MJ, Jadhav S, et al. (2024) Constant-pH Simulations with the Polarizable Atomic Multipole AMOEBA Force Field. Journal of Chemical Theory and Computation
Wang Y, Inizan TJ, Liu C, et al. (2024) Incorporating Neural Networks into the AMOEBA Polarizable Force Field. The Journal of Physical Chemistry. B
Lee J, Guo HF, Wang S, et al. (2023) Unleashing the Potential of 1,3-Diketone Analogues as Selective LH2 Inhibitors. Acs Medicinal Chemistry Letters. 14: 1396-1403
Corrigan RA, Thiel AC, Lynn JR, et al. (2023) A generalized Kirkwood implicit solvent for the polarizable AMOEBA protein model. The Journal of Chemical Physics. 159
Lin YC, Ren P, Webb LJ. (2023) AMOEBA Force Field Predicts Accurate Hydrogen Bond Counts of Nitriles in SNase by Revealing Water-Protein Interaction in Vibrational Absorption Frequencies. The Journal of Physical Chemistry. B
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