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Roger S. Armen

Affiliations: 
2004 University of Washington, Seattle, Seattle, WA 
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"Roger Armen"
Mean distance: 9.34
 		SNBCP
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Parents

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Valerie D. Daggett grad student 2004 University of Washington
 (Does Pauling and Corey's alpha-pleated sheet define the prefibrillar amyloidogenic intermediate in amyloid disease?)

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Publications

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Cingolani G, Panella A, Perrone MG, et al. (2017) Structural basis for selective inhibition of Cyclooxygenase-1 (COX-1) by diarylisoxazoles mofezolac and 3-(5-chlorofuran-2-yl)-5-methyl-4-phenylisoxazole (P6). European Journal of Medicinal Chemistry. 138: 661-668
Schumann M, Armen RS. (2013) Identification of distant drug off-targets by direct superposition of binding pocket surfaces Plos One. 8
Schumann M, Armen RS. (2013) Systematic and efficient side chain optimization for molecular docking using a cheapest-path procedure Journal of Computational Chemistry. 34: 1258-1269
Estrada T, Zhang B, Cicotti P, et al. (2012) A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach Computers in Biology and Medicine. 42: 758-771
Rahaman O, Estrada TP, Doren DJ, et al. (2011) Evaluation of several two-step scoring functions based on linear interaction energy, effective ligand size, and empirical pair potentials for prediction of protein-ligand binding geometry and free energy. Journal of Chemical Information and Modeling. 51: 2047-65
May ER, Armen RS, Mannan AM, et al. (2010) The flexible C-terminal arm of the Lassa arenavirus Z-protein mediates interactions with multiple binding partners Proteins: Structure, Function and Bioinformatics. 78: 2251-2264
Armen RS, Schiller SM, Brooks CL. (2010) Steric and thermodynamic limits of design for the incorporation of large unnatural amino acids in aminoacyl-tRNA synthetase enzymes Proteins: Structure, Function and Bioinformatics. 78: 1926-1938
Armen RS, Chen J, Brooks CL. (2009) An Evaluation of Explicit Receptor Flexibility in Molecular Docking Using Molecular Dynamics and Torsion Angle Molecular Dynamics. Journal of Chemical Theory and Computation. 5: 2909-2923
Steward RE, Armen RS, Daggett V. (2008) Different disease-causing mutations in transthyretin trigger the same conformational conversion. Protein Engineering, Design & Selection : Peds. 21: 187-95
Armen RS, Daggett V. (2005) Characterization of two distinct beta2-microglobulin unfolding intermediates that may lead to amyloid fibrils of different morphology. Biochemistry. 44: 16098-107
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