Joshua L. Adelman, Ph.D.
Affiliations: | University of California, Berkeley, Berkeley, CA, United States |
Area:
protein motors, eukaryotic and prokaryotic cell motility, membrane geometry and protein organization and pattern formation in neural systemsGoogle:
"Joshua Adelman"Mean distance: 10.88 | S | N | B | C | P |
Parents
Sign in to add mentor| George F. Oster | grad student | 2009 | UC Berkeley | |
| (Elucidating the mechanics and mechanism of two prototypical ring shaped proteins using modeling and simulation.) | ||||
| Michael Grabe | post-doc | 2009-2014 | University of Pittsburgh (Neurotree) | |
Collaborators
Sign in to add collaborator| Lillian T. Chong | collaborator | 2009-2015 | University of Pittsburgh |
| Daniel M. Zuckerman | collaborator | 2009-2015 | University of Pittsburgh (Physics Tree) |
BETA: Related publications
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Publications
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| Bogetti AT, Leung JMG, Russo JD, et al. (2023) A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2.0]. Living Journal of Computational Molecular Science. 5 |
| Russo JD, Zhang S, Leung JMG, et al. (2022) WESTPA 2.0: High-Performance Upgrades for Weighted Ensemble Simulations and Analysis of Longer-Timescale Applications. Journal of Chemical Theory and Computation |
| Bogetti AT, Mostofian B, Dickson A, et al. (2019) A Suite of Tutorials for the WESTPA Rare-Events Sampling Software [Article v1.0]. Living Journal of Computational Molecular Science. 1 |
| Capponi S, Adelman J, Rosenberg J, et al. (2017) Weighted Ensemble Approach to In Silico Measure the I-V Relationship in a K + Ion Channel Biophysical Journal. 112: 543a |
| Suárez E, Adelman JL, Zuckerman DM. (2017) Mechanism Beyond Markov Models: History Information is Needed for Unbiased Pathway Reconstruction of Protein Folding Biophysical Journal. 112: 289a-290a |
| Zwier MC, Pratt A, Adelman JL, et al. (2016) Efficient Atomistic Simulation of Pathways and Calculation of Rate Constants for a Protein-Peptide Binding Process: Application to the MDM2 Protein and an Intrinsically Disordered p53 Peptide. The Journal of Physical Chemistry Letters |
| Suárez E, Adelman JL, Zuckerman DM. (2016) Accurate estimation of protein folding and unfolding times: Beyond Markov state models. Journal of Chemical Theory and Computation |
| Adelman JL, Ghezzi C, Bisignano P, et al. (2016) Stochastic steps in secondary active sugar transport. Proceedings of the National Academy of Sciences of the United States of America |
| Adelman JL, Grabe M. (2015) Simulating current-voltage relationships for a narrow ion channel using the weighted ensemble method. Journal of Chemical Theory and Computation. 11: 1907-1918 |
| Zwier MC, Adelman JL, Kaus JW, et al. (2015) WESTPA: An interoperable, highly scalable software package for weighted ensemble simulation and analysis. Journal of Chemical Theory and Computation. 11: 800-809 |