Christine S. Cheng, Ph.D.
Affiliations: | Bioinformatics | University of California, San Diego, La Jolla, CA |
Area:
signaling, transcription, computational network; stress and immune responses, apoptosis, proliferationGoogle:
"Christine Cheng"Mean distance: 10.01 | S | N | B | C | P |
Parents
Sign in to add mentor| Alexander Hoffmann | grad student | 2011 | UCSD | |
| (Innate immune gene expression programs defined by both regulated mRNA synthesis and decay.) | ||||
| Aviv Regev | post-doc | MIT / Harvard (Management Information Systems Tree) | ||
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Publications
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| Mota A, Waxman HK, Hong R, et al. (2021) FOXR1 regulates stress response pathways and is necessary for proper brain development. Plos Genetics. 17: e1009854 |
| Gate RE, Cheng CS, Aiden AP, et al. (2018) Genetic determinants of co-accessible chromatin regions in activated T cells across humans. Nature Genetics |
| Ji Z, He L, Rotem A, et al. (2018) Genome-scale identification of transcription factors that mediate an inflammatory network during breast cellular transformation. Nature Communications. 9: 2068 |
| Soto-Feliciano YM, Bartlebaugh JME, Liu Y, et al. (2017) PHF6 regulates phenotypic plasticity through chromatin organization within lineage-specific genes. Genes & Development |
| Fiziev P, Akdemir KC, Miller JP, et al. (2017) Systematic Epigenomic Analysis Reveals Chromatin States Associated with Melanoma Progression. Cell Reports. 19: 875-889 |
| Cheng CS, Behar MS, Suryawanshi GW, et al. (2017) Iterative Modeling Reveals Evidence of Sequential Transcriptional Control Mechanisms. Cell Systems |
| Sanjana NE, Wright J, Zheng K, et al. (2016) High-resolution interrogation of functional elements in the noncoding genome. Science (New York, N.Y.). 353: 1545-1549 |
| Cheng CS, Rai K, Garber M, et al. (2013) Semiconductor-based DNA sequencing of histone modification states. Nature Communications. 4: 2672 |
| Garber M, Yosef N, Goren A, et al. (2012) A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals. Molecular Cell. 47: 810-22 |
| Escoubet-Lozach L, Benner C, Kaikkonen MU, et al. (2011) Mechanisms establishing TLR4-responsive activation states of inflammatory response genes. Plos Genetics. 7: e1002401 |