Alexander J. Sodt, Ph.D.

Affiliations: 
2007 University of California, Berkeley, Berkeley, CA 
Area:
Theoretical Chemistry
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"Alexander Sodt"
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Parents

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Martin Head-Gordon grad student 2007 UC Berkeley
 (Electronic structure on large molecules: Fast two -electron integrals and linear dependence.)
Teresa Head-Gordon post-doc 2007-2009 NIH (NICHD)
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Publications

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Fu Y, Yogurtcu ON, Kothari R, et al. (2019) An implicit lipid model for efficient reaction-diffusion simulations of protein binding to surfaces of arbitrary topology. The Journal of Chemical Physics. 151: 124115
Lyman E, Sodt AJ. (2016) Amphipathic Helices-Wedge? Or Nae Nae? Biophysical Journal. 110: 1-2
Sodt AJ, Pastor RW, Lyman E. (2015) Hexagonal Substructure and Hydrogen Bonding in Liquid-Ordered Phases Containing Palmitoyl Sphingomyelin. Biophysical Journal. 109: 948-55
Sodt AJ, Mei Y, König G, et al. (2015) Multiple environment single system quantum mechanical/molecular mechanical (MESS-QM/MM) calculations. 1. Estimation of polarization energies. The Journal of Physical Chemistry. A. 119: 1511-23
Perrin BS, Sodt AJ, Cotten ML, et al. (2015) The Curvature Induction of Surface-Bound Antimicrobial Peptides Piscidin 1 and Piscidin 3 Varies with Lipid Chain Length. The Journal of Membrane Biology. 248: 455-67
Tao P, Sodt AJ, Shao Y, et al. (2014) Computing the Free Energy along a Reaction Coordinate Using Rigid Body Dynamics. Journal of Chemical Theory and Computation. 10: 4198-4207
Venable RM, Sodt AJ, Rogaski B, et al. (2014) CHARMM all-atom additive force field for sphingomyelin: elucidation of hydrogen bonding and of positive curvature. Biophysical Journal. 107: 134-45
Sodt AJ, Pastor RW. (2014) Molecular modeling of lipid membrane curvature induction by a peptide: more than simply shape. Biophysical Journal. 106: 1958-69
Sodt AJ, Sandar ML, Gawrisch K, et al. (2014) The molecular structure of the liquid-ordered phase of lipid bilayers. Journal of the American Chemical Society. 136: 725-32
Sodt AJ, Pastor RW. (2013) Bending free energy from simulation: correspondence of planar and inverse hexagonal lipid phases. Biophysical Journal. 104: 2202-11
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