Jianhua Xing, Ph.D.

Affiliations: 
1998-2002 University of California, Berkeley, Berkeley, CA, United States 
 2015- Computational and Systems Biology University of Pittsburgh, Pittsburgh, PA, United States 
Area:
theoretical chemistry, statistical physics, quantitative biology, biophysics, systems biology
Website:
http://www.csb.pitt.edu/jianhua-xing/
Google:
"Jianhua Xing"
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Parents

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Donald G. Truhlar grad student 1996-1998 UMN
William Hughes Miller grad student 2002 UC Berkeley
 (Chemical dynamics applications of semiclassical methods.)
George F. Oster post-doc

Children

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Yan Fu grad student Virginia Tech (Computational Biology Tree)
Hang Zhang grad student Virginia Tech
Zhanghan Wu grad student 2007-2011 Virginia Tech
Jingyu Zhang grad student 2013-2018 University of Pittsburgh
Debasish Mondal post-doc Virginia Tech
Weikang Wang post-doc
XIAOJUN TIAN post-doc 2012-2017 University of Pittsburgh (Computational Biology Tree)

Collaborators

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Ivet Bahar collaborator (MathTree)
Eva Nogales collaborator
John Tyson collaborator (Computational Biology Tree)
Guang Yao collaborator (Neurotree)
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Publications

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Ni K, Yu G, Zheng Z, et al. (2025) LivecellX: A Deep-learning-based, Single-Cell Object-Oriented Framework for Quantitative Analysis in Live-Cell Imaging. Biorxiv : the Preprint Server For Biology
Hu S, Lu Y, Yu G, et al. (2025) Epithelial-mesenchymal transition couples with cell cycle arrest at various stages. Biorxiv : the Preprint Server For Biology
Zhang J, Wang S, Watkins SC, et al. (2025) Long-range genomic loci stochastically assemble into combinatorial forms of chromosome skeleton. Biorxiv : the Preprint Server For Biology
Xing J, Chen Y, Zhang Y, et al. (2025) GraphVelo allows for accurate inference of multimodal omics velocities and molecular mechanisms for single cells. Research Square
Chen Y, Zhang Y, Gan J, et al. (2024) GraphVelo allows inference of multi-modal single cell velocities and molecular mechanisms. Biorxiv : the Preprint Server For Biology
Wang H, Ardila C, Jindal A, et al. (2024) Protrusion force and cell-cell adhesion play a critical role in collective tumor cluster migration. Biorxiv : the Preprint Server For Biology
Wang W, Poe D, Yang Y, et al. (2022) Epithelial-to-mesenchymal transition proceeds through directional destabilization of multidimensional attractor. Elife. 11
Qiu X, Zhang Y, Martin-Rufino JD, et al. (2022) Mapping transcriptomic vector fields of single cells. Cell
Teekakirikul P, Zhu W, Gabriel GC, et al. (2021) Common deletion variants causing protocadherin-α deficiency contribute to the complex genetics of BAV and left-sided congenital heart disease. Hgg Advances. 2
Zhang Y, Zhang S, Xing J, et al. (2021) Normal mode analysis of membrane protein dynamics using the vibrational subsystem analysis. The Journal of Chemical Physics. 154: 195102
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