Jianhua Xing, Ph.D.

Affiliations: 
1998-2002 University of California, Berkeley, Berkeley, CA 
 2015- Computational and Systems Biology University of Pittsburgh, Pittsburgh, PA, United States 
Area:
theoretical chemistry, statistical physics, quantitative biology, biophysics, systems biology
Website:
http://www.csb.pitt.edu/jianhua-xing/
Google:
"Jianhua Xing"
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SNBCP

Parents

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Donald G. Truhlar grad student 1996-1998 UMN
William Hughes Miller grad student 2002 UC Berkeley
 (Chemical dynamics applications of semiclassical methods.)
George F. Oster post-doc

Children

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Yan Fu grad student Virginia Tech (Computational Biology Tree)
Hang Zhang grad student Virginia Tech
Zhanghan Wu grad student 2007-2011 Virginia Tech
Jingyu Zhang grad student 2013-2018 University of Pittsburgh
XIAOJUN TIAN post-doc 2012-2017 University of Pittsburgh (Computational Biology Tree)

Collaborators

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Ivet Bahar collaborator (MathTree)
Eva Nogales collaborator
John Tyson collaborator (Computational Biology Tree)
Guang Yao collaborator (Neurotree)
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Publications

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Zhang Y, Zhang S, Xing J, et al. (2021) Normal mode analysis of membrane protein dynamics using the vibrational subsystem analysis. The Journal of Chemical Physics. 154: 195102
Chen YJ, Cheng YY, Wang W, et al. (2020) Erratum to: Rapid, modular, and cost-effective generation of donor DNA constructs for CRISPR-based gene knock-in. Biology Methods & Protocols. 5: bpaa021
Wang W, Douglas D, Zhang J, et al. (2020) Live-cell imaging and analysis reveal cell phenotypic transition dynamics inherently missing in snapshot data. Science Advances. 6
Zhang Y, Krieger J, Mikulska-Ruminska K, et al. (2020) State-dependent sequential allostery exhibited by chaperonin TRiC/CCT revealed by network analysis of Cryo-EM maps. Progress in Biophysics and Molecular Biology
Chen YJ, Cheng YY, Wang W, et al. (2020) Rapid, modular, and cost-effective generation of donor DNA constructs for CRISPR-based gene knock-in. Biology Methods & Protocols. 5: bpaa006
Tian XJ, Zhou D, Fu H, et al. (2020) Sequential Wnt Agonist Then Antagonist Treatment Accelerates Tissue Repair and Minimizes Fibrosis. Iscience. 23: 101047
Yang J, Antin P, Berx G, et al. (2020) Guidelines and definitions for research on epithelial-mesenchymal transition. Nature Reviews. Molecular Cell Biology
Fujimaki K, Li R, Chen H, et al. (2019) Graded regulation of cellular quiescence depth between proliferation and senescence by a lysosomal dimmer switch. Proceedings of the National Academy of Sciences of the United States of America
Igoshin OA, Chen J, Xing J, et al. (2019) Biophysics at the coffee shop: lessons learned working with George Oster. Molecular Biology of the Cell. 30: 1882-1889
Wang W, Taft DA, Chen YJ, et al. (2019) Learn to segment single cells with deep distance estimator and deep cell detector. Computers in Biology and Medicine. 108: 133-141
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