Min-yi Shen, Ph.D.

Affiliations: 
2002 University of Chicago, Chicago, IL 
Area:
statistical mechanics of polymers in the liquid phase, protein dynamics aggregation, and folding, equilibrium aggregation phenomena, and molecular electronic structure
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"Min-yi Shen"
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Karl F. Freed grad student 2002 Chicago
 (Computer simulations of protein dynamics.)
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Publications

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Eramian D, Eswar N, Shen MY, et al. (2008) How well can the accuracy of comparative protein structure models be predicted? Protein Science : a Publication of the Protein Society. 17: 1881-93
Eswar N, Eramian D, Webb B, et al. (2008) Protein structure modeling with MODELLER. Methods in Molecular Biology (Clifton, N.J.). 426: 145-59
Eswar N, Webb B, Marti-Renom MA, et al. (2007) Comparative protein structure modeling using MODELLER. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 2.9
Eswar N, Webb B, Marti-Renom MA, et al. (2006) Comparative protein structure modeling using Modeller. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 5.6
Korkin D, Davis FP, Alber F, et al. (2006) Structural modeling of protein interactions by analogy: application to PSD-95. Plos Computational Biology. 2: e153
Shen MY, Sali A. (2006) Statistical potential for assessment and prediction of protein structures. Protein Science : a Publication of the Protein Society. 15: 2507-24
Colubri A, Jha AK, Shen MY, et al. (2006) Minimalist representations and the importance of nearest neighbor effects in protein folding simulations. Journal of Molecular Biology. 363: 835-57
Eramian D, Shen MY, Devos D, et al. (2006) A composite score for predicting errors in protein structure models. Protein Science : a Publication of the Protein Society. 15: 1653-66
Davis FP, Braberg H, Shen MY, et al. (2006) Protein complex compositions predicted by structural similarity. Nucleic Acids Research. 34: 2943-52
Pieper U, Eswar N, Davis FP, et al. (2006) MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Research. 34: D291-5
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