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Jouko J. Virtanen, Ph.D.

Affiliations: 
2012 Chemistry University of Chicago, Chicago, IL 
Area:
statistical mechanics of polymers in the liquid phase, protein dynamics aggregation, and folding, equilibrium aggregation phenomena, and molecular electronic structure
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"Jouko Virtanen"
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Karl F. Freed grad student 2012 Chicago
 (Modeling the hydration layer around proteins and nucleic acids.)

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Publications

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Virtanen JJ, Zhang Y. (2018) MR-REX: molecular replacement by cooperative conformational search and occupancy optimization on low-accuracy protein models. Acta Crystallographica. Section D, Structural Biology. 74: 606-620
Wang Y, Virtanen J, Xue Z, et al. (2017) I-TASSER-MR: automated molecular replacement for distant-homology proteins using iterative fragment assembly and progressive sequence truncation. Nucleic Acids Research
Virtanen JJ, Sosnick TR, Freed KF. (2016) Erratum: "Ionic strength independence of charge distributions in solvation of biomolecules" [J. Chem. Phys. 141, 22D503 (2014)]. The Journal of Chemical Physics. 145: 059903
Wang Y, Virtanen J, Xue Z, et al. (2016) Using iterative fragment assembly and progressive sequence truncation to facilitate phasing and crystal structure determination of distantly related proteins. Acta Crystallographica. Section D, Structural Biology. 72: 616-628
Zhang W, Yang J, He B, et al. (2015) Integration of QUARK and I-TASSER for Ab Initio Protein Structure Prediction in CASP11. Proteins
Yang J, Zhang W, He B, et al. (2015) Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade. Proteins
Virtanen JJ, Sosnick TR, Freed KF. (2014) Ionic strength independence of charge distributions in solvation of biomolecules. The Journal of Chemical Physics. 141: 22D503
Virtanen JJ, Makowski L, Sosnick TR, et al. (2011) Modeling the hydration layer around proteins: applications to small- and wide-angle x-ray scattering. Biophysical Journal. 101: 2061-9
Virtanen JJ, Makowski L, Sosnick TR, et al. (2010) Modeling the hydration layer around proteins: HyPred. Biophysical Journal. 99: 1611-9
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