Bojan Zagrovic, Ph.D.
Affiliations: | 2004 | Stanford University, Palo Alto, CA |
Area:
theoretical methods to understand the physical properties of biological moleculesGoogle:
"Bojan Zagrovic"Mean distance: 10.38 | S | N | B | C | P |
Parents
Sign in to add mentor| Vijay S. Pande | grad student | 2004 | Stanford | |
| (Studying protein folding and dynamics using world-wide distributed computing.) | ||||
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Publications
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| Polyansky AA, Gallego LD, Efremov RG, et al. (2023) Protein compactness and interaction valency define the architecture of a biomolecular condensate across scales. Elife. 12 |
| Hajnic M, Gil SA, Polyansky AA, et al. (2022) Interaction preferences between protein side chains and key epigenetic modifications 5-methylcytosine, 5-hydroxymethycytosine and N-methyladenine. Scientific Reports. 12: 19583 |
| Fleck M, Polyansky AA, Zagrovic B. (2018) Self-Consistent Framework Connecting Experimental Proxies of Protein Dynamics with Configurational Entropy. Journal of Chemical Theory and Computation |
| Hlevnjak M, Zagrovic B. (2015) Malleable nature of mRNA-protein compositional complementarity and its functional significance. Nucleic Acids Research. 43: 3012-21 |
| de Ruiter A, Zagrovic B. (2015) Absolute binding-free energies between standard RNA/DNA nucleobases and amino-acid sidechain analogs in different environments. Nucleic Acids Research. 43: 708-18 |
| Hajnic M, Osorio JI, Zagrovic B. (2014) Computational analysis of amino acids and their sidechain analogs in crowded solutions of RNA nucleobases with implications for the mRNA-protein complementarity hypothesis. Nucleic Acids Research. 42: 12984-94 |
| Petrov D, Zagrovic B. (2014) Are current atomistic force fields accurate enough to study proteins in crowded environments? Plos Computational Biology. 10: e1003638 |
| Kuzmanic A, Pannu NS, Zagrovic B. (2014) X-ray refinement significantly underestimates the level of microscopic heterogeneity in biomolecular crystals. Nature Communications. 5: 3220 |
| Polyansky AA, Hlevnjak M, Zagrovic B. (2013) Analogue encoding of physicochemical properties of proteins in their cognate messenger RNAs. Nature Communications. 4: 2784 |
| Petrov D, Margreitter C, Grandits M, et al. (2013) A systematic framework for molecular dynamics simulations of protein post-translational modifications. Plos Computational Biology. 9: e1003154 |