Sidney P. Elmer, Ph.D.

Affiliations: 
2005 Stanford University, Palo Alto, CA 
Area:
theoretical methods to understand the physical properties of biological molecules
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"Sidney Elmer"
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Vijay S. Pande grad student 2005 Stanford
 (Molecular dynamics studies on the folding dynamics of poly-phenylacetylene, a non-biological polymer with a helical, folded state.)
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Publications

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Anderson PC, De Sapio V, Turner KB, et al. (2012) Identification of binding specificity-determining features in protein families. Journal of Medicinal Chemistry. 55: 1926-39
Elmer SP, Park S, Pande VS. (2005) Foldamer dynamics expressed via Markov state models. II. State space decomposition. The Journal of Chemical Physics. 123: 114903
Elmer SP, Park S, Pande VS. (2005) Foldamer dynamics expressed via Markov state models. I. Explicit solvent molecular-dynamics simulations in acetonitrile, chloroform, methanol, and water. The Journal of Chemical Physics. 123: 114902
Elmer SP, Pande VS. (2005) Length dependent folding kinetics of phenylacetylene oligomers: structural characterization of a kinetic trap. The Journal of Chemical Physics. 122: 124908
Elmer SP, Pande VS. (2004) Foldamer simulations: novel computational methods and applications to poly-phenylacetylene oligomers. The Journal of Chemical Physics. 121: 12760-71
Pande VS, Baker I, Chapman J, et al. (2003) Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing. Biopolymers. 68: 91-109
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