Eric J. Sorin, Ph.D.

2007 Stanford University, Palo Alto, CA 
theoretical methods to understand the physical properties of biological molecules
"Eric Sorin"
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Vijay S. Pande grad student 2007 Stanford
 (Biomolecular assembly in silico: Using massively parallel simulations to probe protein and RNA folding dynamics.)
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Bains GK, Kim SH, Sorin EJ, et al. (2012) The extent of pyrene excimer fluorescence emission is a reflector of distance and flexibility: analysis of the segment linking the LDL receptor-binding and tetramerization domains of apolipoprotein E3. Biochemistry. 51: 6207-19
Thompson EJ, DePaul AJ, Patel SS, et al. (2010) Evaluating molecular mechanical potentials for helical peptides and proteins. Plos One. 5: e10056
Monticelli L, Sorin EJ, Tieleman DP, et al. (2008) Molecular simulation of multistate peptide dynamics: a comparison between microsecond timescale sampling and multiple shorter trajectories. Journal of Computational Chemistry. 29: 1740-52
Sorin EJ, Pande VS. (2006) Nanotube confinement denatures protein helices. Journal of the American Chemical Society. 128: 6316-7
Sorin EJ, Rhee YM, Shirts MR, et al. (2006) The solvation interface is a determining factor in peptide conformational preferences. Journal of Molecular Biology. 356: 248-56
Fujitani H, Tanida Y, Ito M, et al. (2005) Direct calculation of the binding free energies of FKBP ligands. The Journal of Chemical Physics. 123: 084108
Zagrovic B, Lipfert J, Sorin EJ, et al. (2005) Unusual compactness of a polyproline type II structure. Proceedings of the National Academy of Sciences of the United States of America. 102: 11698-703
Snow CD, Sorin EJ, Rhee YM, et al. (2005) How well can simulation predict protein folding kinetics and thermodynamics? Annual Review of Biophysics and Biomolecular Structure. 34: 43-69
Sorin EJ, Pande VS. (2005) Empirical force-field assessment: The interplay between backbone torsions and noncovalent term scaling. Journal of Computational Chemistry. 26: 682-90
Sorin EJ, Rhee YM, Pande VS. (2005) Does water play a structural role in the folding of small nucleic acids? Biophysical Journal. 88: 2516-24
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