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Jin Yu, Ph.D.

Affiliations: 
2007 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
theoretical biophysics
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"Jin Yu"
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Parents

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Klaus Schulten grad student 2007 UIUC
 (Modeling and simulating biomolecular machineries at atomic scale and beyond.)

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Publications

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Long C, E C, Da LT, et al. (2019) A Viral T7 RNA Polymerase Ratcheting Along DNA With Fidelity Control. Computational and Structural Biotechnology Journal. 17: 638-644
Long C, E C, Da LT, et al. (2019) Determining selection free energetics from nucleotide pre-insertion to insertion in viral T7 RNA polymerase transcription fidelity control. Nucleic Acids Research
Jing X, Loskot P, Yu J. (2018) How does supercoiling regulation on a battery of RNA polymerases impact on bacterial transcription bursting? Physical Biology
Da LT, Yu J. (2018) Base-flipping dynamics from an intrahelical to an extrahelical state exerted by thymine DNA glycosylase during DNA repair process. Nucleic Acids Research
Long C, Yu J. (2018) Balancing Non-Equilibrium Driving with Nucleotide Selectivity at Kinetic Checkpoints in Polymerase Fidelity Control Entropy. 20: 306
Da LT, Shi Y, Ning G, et al. (2017) Dynamics of the excised base release in thymine DNA glycosylase during DNA repair process. Nucleic Acids Research
Da LT, E C, Shuai Y, et al. (2017) T7 RNA polymerase translocation is facilitated by a helix opening on the fingers domain that may also prevent backtracking. Nucleic Acids Research
E C, Duan B, Yu J. (2017) The Nucleotide Selectivity at a Pre-Insertion Checkpoint of T7 RNA Polymerase Transcription Elongation. The Journal of Physical Chemistry. B
Yu J. (2016) Computational investigations on polymerase actions in gene transcription and replication: Combining physical modeling and atomistic simulations Chinese Physics B. 25: 18706
E C, Da L, Duan B, et al. (2016) PPi Release Followed by DNA Translocation Studied from Atomistic Simulations of T7 RNA Polymerase Transcription Biophysical Journal. 110: 232
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