Peter L. Freddolino, Ph.D.

2009 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
theoretical biophysics
"Peter Freddolino"
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Klaus Schulten grad student 2009 UIUC
 (Application of all-atom and coarse-grained molecular dynamics simulations to long timescale structural transitions of proteins.)
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Ribeiro JV, Bernardi RC, Rudack T, et al. (2016) QwikMD - Integrative Molecular Dynamics Toolkit for Novices and Experts. Scientific Reports. 6: 26536
Freddolino PL, Goodarzi H, Tavazoie S. (2014) Revealing the genetic basis of natural bacterial phenotypic divergence. Journal of Bacteriology. 196: 825-39
Hottes AK, Freddolino PL, Khare A, et al. (2013) Bacterial adaptation through loss of function. Plos Genetics. 9: e1003617
Freddolino PL, Gardner KH, Schulten K. (2013) Signaling mechanisms of LOV domains: new insights from molecular dynamics studies. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 12: 1158-70
Freddolino PL, Tavazoie S. (2012) The dawn of virtual cell biology. Cell. 150: 248-50
Liu Y, Strümpfer J, Freddolino PL, et al. (2012) Structural Characterization of λ-Repressor Folding from All-Atom Molecular Dynamics Simulations. The Journal of Physical Chemistry Letters. 3: 1117-1123
Freddolino PL, Goodarzi H, Tavazoie S. (2012) Fitness landscape transformation through a single amino acid change in the rho terminator. Plos Genetics. 8: e1002744
Freddolino PL, Tavazoie S. (2012) Beyond homeostasis: a predictive-dynamic framework for understanding cellular behavior. Annual Review of Cell and Developmental Biology. 28: 363-84
Freddolino PL, Amini S, Tavazoie S. (2012) Newly identified genetic variations in common Escherichia coli MG1655 stock cultures. Journal of Bacteriology. 194: 303-6
Schreiner E, Trabuco LG, Freddolino PL, et al. (2011) Stereochemical errors and their implications for molecular dynamics simulations. Bmc Bioinformatics. 12: 190
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