Peter L. Freddolino, Ph.D.

2009 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
theoretical biophysics
"Peter Freddolino"
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Klaus Schulten grad student 2009 UIUC
 (Application of all-atom and coarse-grained molecular dynamics simulations to long timescale structural transitions of proteins.)
Saeed Tavazoie post-doc University of Michigan Medical School
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Ketcham A, Freddolino PL, Tavazoie S. (2022) Intracellular acidification is a hallmark of thymineless death in E. coli. Plos Genetics. 18: e1010456
Freddolino PL, Amemiya HM, Goss TJ, et al. (2022) Correction: Dynamic landscape of protein occupancy across the Escherichia coli chromosome. Plos Biology. 20: e3001557
Freddolino PL, Amemiya HM, Goss TJ, et al. (2021) Dynamic landscape of protein occupancy across the Escherichia coli chromosome. Plos Biology. 19: e3001306
Wolfe MB, Schagat TL, Paulsen MT, et al. (2020) Principles of mRNA control by human PUM proteins elucidated from multi-modal experiments and integrative data analysis. Rna (New York, N.Y.)
Walker DM, Freddolino PL, Harshey RM. (2020) A Well-Mixed E. coli Genome: Widespread Contacts Revealed by Tracking Mu Transposition. Cell
Barnier C, Piersimoni L, Price J, et al. (2020) A Unified Workflow to Identify Quaternary Structures and Changes in Protein-protein Interactions from Crosslinking-based Mass Spectrometry Biophysical Journal. 118: 357a
Zhou N, Jiang Y, Bergquist TR, et al. (2019) The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens. Genome Biology. 20: 244
Sjulstok E, Solov'yov IA, Freddolino PL. (2019) Applications of molecular modeling to flavoproteins: Insights and challenges. Methods in Enzymology. 620: 277-314
Kroner GM, Wolfe MB, Freddolino PL. (2018) Lrp regulates one-third of the genome via direct, cooperative, and indirect routes. Journal of Bacteriology
T Abshire E, Chasseur J, Bohn JA, et al. (2018) The structure of human Nocturnin reveals a conserved ribonuclease domain that represses target transcript translation and abundance in cells. Nucleic Acids Research
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