Robert F. Shoemaker, Ph.D.

2010 Chemistry University of California, San Diego, La Jolla, CA 
Inference of gene regulatory networks and determination of protein specificity
"Robert Shoemaker"
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Wei Wang grad student 2010 UCSD
 (Inter- and Intracellular Dynamics of DNA Methylation.)
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van Steenbergen HW, Luijk R, Shoemaker R, et al. (2014) Differential methylation within the major histocompatibility complex region in rheumatoid arthritis: a replication study. Rheumatology (Oxford, England). 53: 2317-8
Whitaker JW, Shoemaker R, Boyle DL, et al. (2013) An imprinted rheumatoid arthritis methylome signature reflects pathogenic phenotype. Genome Medicine. 5: 40
Won KJ, Xu Z, Zhang X, et al. (2012) Global identification of transcriptional regulators of pluripotency and differentiation in embryonic stem cells Nucleic Acids Research. 40: 8199-8209
Diep D, Plongthongkum N, Gore A, et al. (2012) Library-free methylation sequencing with bisulfite padlock probes Nature Methods. 9: 270-272
Chang R, Shoemaker R, Wang W. (2011) Systematic search for recipes to generate induced pluripotent stem cells Plos Computational Biology. 7
Shoemaker R, Wang W, Zhang K. (2011) Mediators and dynamics of DNA methylation Wiley Interdisciplinary Reviews: Systems Biology and Medicine. 3: 281-298
Shoemaker R, Deng J, Wang W, et al. (2010) Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome. Genome Research. 20: 883-9
Won KJ, Agarwal S, Shen L, et al. (2009) An integrated approach to identifying cis-regulatory modules in the human genome Plos One. 4
Deng J, Shoemaker R, Xie B, et al. (2009) Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming. Nature Biotechnology. 27: 353-60
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