Nisha Rajagopal, Ph.D.

2013 Bioinformatics and System Biology University of California, San Diego, La Jolla, CA 
Inference of gene regulatory networks and determination of protein specificity
"Nisha Rajagopal"
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Wei Wang grad student 2013 UCSD
 (Navigating the Human Epigenome through Random Forests.)
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Hashimoto TB, Sherwood R, Kang DD, et al. (2016) A synergistic DNA logic predicts genome-wide chromatin accessibility. Genome Research
Rajagopal N, Srinivasan S, Kooshesh K, et al. (2016) High-throughput mapping of regulatory DNA. Nature Biotechnology
Schultz MD, He Y, Whitaker JW, et al. (2015) Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation. Nature
Schultz MD, He Y, Whitaker JW, et al. (2015) Human body epigenome maps reveal noncanonical DNA methylation variation. Nature. 523: 212-6
Leung D, Jung I, Rajagopal N, et al. (2015) Integrative analysis of haplotype-resolved epigenomes across human tissues. Nature. 518: 350-4
Dixon JR, Jung I, Selvaraj S, et al. (2015) Chromatin architecture reorganization during stem cell differentiation. Nature. 518: 331-6
Kundaje A, Meuleman W, et al. (2015) Integrative analysis of 111 reference human epigenomes. Nature. 518: 317-30
Rajagopal N, Ernst J, Ray P, et al. (2014) Distinct and predictive histone lysine acetylation patterns at promoters, enhancers, and gene bodies. G3 (Bethesda, Md.). 4: 2051-63
Hon GC, Rajagopal N, Shen Y, et al. (2013) Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues. Nature Genetics. 45: 1198-206
Xie W, Schultz MD, Lister R, et al. (2013) Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell. 153: 1134-48
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