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Alexander J. Ruthenburg, Ph.D.

Affiliations: 
2005 Harvard University, Cambridge, MA, United States 
 2010- Molecular Genetics and Cell Biology University of Chicago, Chicago, IL 
Area:
chromatin, biochemistry, chemical biology, structure
Website:
http://mgcb.bsd.uchicago.edu/faculty/ruthenburg/index.html
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"Alexander Ruthenburg"
Bio:

http://www.ruthenlab.org/web/People.html

Mean distance: 7.88
 

Parents

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Gregory L. Verdine grad student 2005 Harvard
 (Type II topoisomerase-DNA interactions: Structure, mechanism, and covalent trapping.)
C. David Allis post-doc 2006-2010 Rockefeller

Children

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Johnathon M Hall grad student 2016- Chicago
Michael Zelko grad student 2021- Chicago
Zhonglei Chen grad student 2014 Chicago
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Publications

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Gaurav N, Kanai A, Lachance C, et al. (2024) Guiding the HBO1 complex function through the JADE subunit. Nature Structural & Molecular Biology
Kainth AS, Haddad GA, Hall JM, et al. (2023) Merging short and stranded long reads improves transcript assembly. Plos Computational Biology. 19: e1011576
Chi P, Lewis PW, Lu C, et al. (2023) Charles David Allis (1951-2023). Nature Genetics
Zeng Y, Fair BJ, Zeng H, et al. (2022) Profiling lariat intermediates reveals genetic determinants of early and late co-transcriptional splicing. Molecular Cell
Oikawa M, Simeone A, Hormanseder E, et al. (2020) Epigenetic homogeneity in histone methylation underlies sperm programming for embryonic transcription. Nature Communications. 11: 3491
Sun X, Wang Z, Hall JM, et al. (2020) Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq. Plos Computational Biology. 16: e1007119
Grzybowski AT, Shah RN, Richter WF, et al. (2019) Native internally calibrated chromatin immunoprecipitation for quantitative studies of histone post-translational modifications. Nature Protocols
Bennett RL, Bele A, Small EC, et al. (2019) A Mutation in Histone H2B Represents a New Class of Oncogenic Driver. Cancer Discovery
Shah RN, Grzybowski AT, Cornett EM, et al. (2018) Examining the Roles of H3K4 Methylation States with Systematically Characterized Antibodies. Molecular Cell
Karki S, Kennedy DE, Mclean K, et al. (2018) Regulated Capture of Vκ Gene Topologically Associating Domains by Transcription Factories. Cell Reports. 24: 2443-2456
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