Alexander J. Ruthenburg, Ph.D.
Affiliations: | 2005 | Harvard University, Cambridge, MA, United States | |
| 2010- | Molecular Genetics and Cell Biology | University of Chicago, Chicago, IL |
Area:
chromatin, biochemistry, chemical biology, structureWebsite:
http://mgcb.bsd.uchicago.edu/faculty/ruthenburg/index.htmlGoogle:
"Alexander Ruthenburg"Bio:
http://www.ruthenlab.org/web/People.html
Mean distance: 7.88
Parents
Sign in to add mentor| Gregory L. Verdine | grad student | 2005 | Harvard | |
| (Type II topoisomerase-DNA interactions: Structure, mechanism, and covalent trapping.) | ||||
| C. David Allis | post-doc | 2006-2010 | Rockefeller | |
Children
Sign in to add trainee| Johnathon M Hall | grad student | 2016- | Chicago |
| Michael Zelko | grad student | 2021- | Chicago |
| Zhonglei Chen | grad student | 2014 | Chicago |
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Publications
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| Gaurav N, Kanai A, Lachance C, et al. (2024) Guiding the HBO1 complex function through the JADE subunit. Nature Structural & Molecular Biology |
| Kainth AS, Haddad GA, Hall JM, et al. (2023) Merging short and stranded long reads improves transcript assembly. Plos Computational Biology. 19: e1011576 |
| Chi P, Lewis PW, Lu C, et al. (2023) Charles David Allis (1951-2023). Nature Genetics |
| Zeng Y, Fair BJ, Zeng H, et al. (2022) Profiling lariat intermediates reveals genetic determinants of early and late co-transcriptional splicing. Molecular Cell |
| Oikawa M, Simeone A, Hormanseder E, et al. (2020) Epigenetic homogeneity in histone methylation underlies sperm programming for embryonic transcription. Nature Communications. 11: 3491 |
| Sun X, Wang Z, Hall JM, et al. (2020) Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq. Plos Computational Biology. 16: e1007119 |
| Grzybowski AT, Shah RN, Richter WF, et al. (2019) Native internally calibrated chromatin immunoprecipitation for quantitative studies of histone post-translational modifications. Nature Protocols |
| Bennett RL, Bele A, Small EC, et al. (2019) A Mutation in Histone H2B Represents a New Class of Oncogenic Driver. Cancer Discovery |
| Shah RN, Grzybowski AT, Cornett EM, et al. (2018) Examining the Roles of H3K4 Methylation States with Systematically Characterized Antibodies. Molecular Cell |
| Karki S, Kennedy DE, Mclean K, et al. (2018) Regulated Capture of Vκ Gene Topologically Associating Domains by Transcription Factories. Cell Reports. 24: 2443-2456 |