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Somenath Bakshi, Ph.D.

Affiliations: 
Chemistry University of Cambridge, Cambridge, England, United Kingdom 
Area:
Quantitative fluorescence microscopy in vivo and in vitro
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Parents

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James C. Weisshaar grad student 2013 UW Madison
 (Spatial biology of transcription and translation in live E. coli using super-resolution fluorescence microscopy.)
Johan Paulsson post-doc 2014-2018 Harvard (Microtree)

Children

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Georgeos Hardo grad student Cambridge (Microtree)
Camillo Moschner grad student Cambridge

Collaborators

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Publications

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Hardo G, Noka M, Bakshi S. (2022) Synthetic Micrographs of Bacteria (SyMBac) allows accurate segmentation of bacterial cells using deep neural networks. Bmc Biology. 20: 263
Moschner C, Wedd C, Bakshi S. (2022) The context matrix: Navigating biological complexity for advanced biodesign. Frontiers in Bioengineering and Biotechnology. 10: 954707
Bakshi S, Leoncini E, Baker C, et al. (2021) Tracking bacterial lineages in complex and dynamic environments with applications for growth control and persistence. Nature Microbiology. 6: 783-791
Manuse S, Shan Y, Canas-Duarte SJ, et al. (2021) Bacterial persisters are a stochastically formed subpopulation of low-energy cells. Plos Biology. 19: e3001194
Hardo G, Bakshi S. (2021) Challenges of analysing stochastic gene expression in bacteria using single-cell time-lapse experiments. Essays in Biochemistry. 65: 67-79
Riglar DT, Richmond DL, Potvin-Trottier L, et al. (2021) Author Correction: Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator. Nature Communications. 12: 1818
Riglar DT, Richmond DL, Potvin-Trottier L, et al. (2019) Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator. Nature Communications. 10: 4665
Lord ND, Norman TM, Yuan R, et al. (2019) Stochastic antagonism between two proteins governs a bacterial cell fate switch. Science (New York, N.Y.). 366: 116-120
Lepore A, Taylor H, Landgraf D, et al. (2019) Quantification of very low-abundant proteins in bacteria using the HaloTag and epi-fluorescence microscopy. Scientific Reports. 9: 7902
Okumus B, Baker CJ, Arias-Castro JC, et al. (2018) Single-cell microscopy of suspension cultures using a microfluidics-assisted cell screening platform. Nature Protocols. 13: 170-194
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