Andrew M. Simms, Ph.D.
Affiliations: | 2011 | University of Washington, Seattle, Seattle, WA |
Area:
biophysics, protein dynamics, molecular dynamics simulations, amyloidGoogle:
"Andrew Simms"Mean distance: 9.34 | S | N | B | C | P |
Parents
Sign in to add mentor| Valerie D. Daggett | grad student | 2011 | University of Washington | |
| (Mining Mountains of Data: Organizing All Atom Molecular Dynamics Protein Simulation Data into SQL and OLAP Cubes.) | ||||
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Publications
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| Simms AM, Daggett V. (2012) Protein Simulation Data in the Relational Model. The Journal of Supercomputing. 62: 150-173 |
| Toofanny RD, Simms AM, Beck DA, et al. (2011) Implementation of 3D spatial indexing and compression in a large-scale molecular dynamics simulation database for rapid atomic contact detection. Bmc Bioinformatics. 12: 334 |
| Schaeffer RD, Jonsson AL, Simms AM, et al. (2011) Generation of a consensus protein domain dictionary. Bioinformatics (Oxford, England). 27: 46-54 |
| van der Kamp MW, Schaeffer RD, Jonsson AL, et al. (2010) Dynameomics: a comprehensive database of protein dynamics. Structure (London, England : 1993). 18: 423-35 |
| Simms AM, Toofanny RD, Kehl C, et al. (2008) Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations. Protein Engineering, Design & Selection : Peds. 21: 369-77 |
| Kehl C, Simms AM, Toofanny RD, et al. (2008) Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data. Protein Engineering, Design & Selection : Peds. 21: 379-86 |