Christina Bergonzo, Ph.D.
Affiliations: | 2012 | Chemistry | Stony Brook University, Stony Brook, NY, United States |
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"Christina Bergonzo"Mean distance: 5687.57
Parents
Sign in to add mentor| Carlos Simmerling | grad student | 2012 | SUNY Stony Brook | |
| (Understanding the Recognition Mechanism of Repair Protein Fpg: Development and Application of Ensemble Approaches to Long Timescale Dynamics.) | ||||
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Publications
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| Bergonzo C, Grishaev AV, Bottaro S. (2022) Conformational Heterogeneity of UCAAUC RNA Oligonucleotide from Molecular Dynamics Simulations, SAXS, and NMR experiments. Rna (New York, N.Y.) |
| Roe DR, Bergonzo C. (2022) prepareforleap: An automated tool for fast PDB-to-parameter generation. Journal of Computational Chemistry. 43: 930-935 |
| Bergonzo C, Szakal AL. (2020) Using All-Atom Potentials to Refine RNA Structure Predictions of SARS-CoV-2 Stem Loops. International Journal of Molecular Sciences. 21 |
| Bergonzo C, Grishaev A. (2019) Accuracy of MD solvent models in RNA structure refinement assessed via liquid-crystal NMR and spin relaxation data. Journal of Structural Biology |
| Schultz D, Brinson RG, Sari N, et al. (2019) Structural insights into DNA-stabilized silver clusters. Soft Matter |
| Bergonzo C, Grishaev A. (2019) Maximizing accuracy of RNA structure in refinement against residual dipolar couplings. Journal of Biomolecular Nmr |
| Bergonzo C, Cheatham TE. (2017) Mg(2+) Binding Promotes SLV as a Scaffold in Varkud Satellite Ribozyme SLI-SLV Kissing Loop Junction. Biophysical Journal |
| Hayatshahi HS, Bergonzo C, Cheatham Iii TE. (2017) Investigating the ion dependence of the first unfolding step of GTPase-Associating Center ribosomal RNA. Journal of Biomolecular Structure & Dynamics. 1-11 |
| Li H, Endutkin AV, Bergonzo C, et al. (2017) DNA deformation-coupled recognition of 8-oxoguanine: conformational kinetic gating in human DNA glycosylase. Journal of the American Chemical Society |
| Bergonzo C, Hall KB, Cheatham TE. (2016) Divalent Ion Dependent Conformational Changes in an RNA Stem-Loop Observed by Molecular Dynamics. Journal of Chemical Theory and Computation |