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Mark B. Gerstein

Affiliations: 
Molecular Biophysics and Biochemistry Yale University, New Haven, CT 
Area:
Computational Biology and Bioinformatics
Website:
https://sites.gersteinlab.org/research/
Google:
"Mark Gerstein"
Bio:

http://www.gersteinlab.org/

Mean distance: (not calculated yet)
 
SNBCP
Cross-listing: Computational Biology Tree

Parents

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Cyrus H. Chothia grad student 1993 Cambridge
Ruth M. Lynden-Bell grad student 1993 Cambridge
 (Protein recognition: surfaces and conformational change)
Michael Levitt post-doc 1993-1996 Stanford

Children

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Paul Bertone grad student Cambridge (Computational Biology Tree)
Donghoon Lee grad student Yale (Computational Biology Tree)
Werner G. Krebs grad student 1996-2001 Yale (Computational Biology Tree)
Ronald Jansen grad student 2002 Yale (Computational Biology Tree)
Rajdeep Das grad student 2003 Yale (Computational Biology Tree)
Vadim Alexandrov grad student 2004 Yale (Computational Biology Tree)
Dov Greenbaum grad student 2004 Yale (Computational Biology Tree)
Haiyuan Yu grad student 2005 Yale (Computational Biology Tree)
Thomas E. Royce grad student 2007 Yale (Computational Biology Tree)
Michael R. Seringhaus grad student 2007 Yale (Computational Biology Tree)
Samuel C. Flores grad student 2008 Yale (Computational Biology Tree)
Tara A. Gianoulis grad student 2009 Yale (Computational Biology Tree)
Yuk L. Yip grad student 2009 Yale (Computational Biology Tree)
Jiang Du grad student 2010 Yale (Computational Biology Tree)
Hugo Y. Lam grad student 2010 Yale (Computational Biology Tree)
Prianka Patel grad student 2010 Yale (Computational Biology Tree)
Chong Shou grad student 2011 Yale (Computational Biology Tree)
Raymond K. Auerbach grad student 2012 Yale (Computational Biology Tree)
Lukas Habegger grad student 2012 Yale (Computational Biology Tree)
Xinmeng Mu grad student 2012 Yale (Computational Biology Tree)
Jieming Chen grad student 2010-2016 (Computational Biology Tree)
Yu Xia post-doc (Computational Biology Tree)
Gamze Gursoy post-doc 2016- Yale (BME Tree)
Xiangmeng Kong post-doc 2017- Yale
ZhaoLei Zhang post-doc 2001-2004 Yale
Alberto Paccanaro post-doc 2003-2006 Yale (Neurotree)
Jan O. Korbel post-doc 2005-2007 European Molecular Biology Laboratory (EMBL)
Yan Zhang post-doc 2012-2016 Yale
Xu Shi post-doc 2017-2019 Yale (Computational Biology Tree)

Collaborators

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Diego Ariel Galeano collaborator (Neurotree)
BETA: Related publications

Publications

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Ash GI, Stults-Kolehmainen M, Busa MA, et al. (2021) Establishing a Global Standard for Wearable Devices in Sport and Exercise Medicine: Perspectives from Academic and Industry Stakeholders. Sports Medicine (Auckland, N.Z.)
Amaya C, Cameron CJ, Devarkar SC, et al. (2021) Nodal modulator (NOMO) is required to sustain endoplasmic reticulum morphology. The Journal of Biological Chemistry. 100937
Koenig MJ, Agana BA, Kaufman JM, et al. (2021) STK11/LKB1 loss of function is associated with global DNA hypomethylation and S-adenosyl-methionine depletion in human lung adenocarcinoma. Cancer Research
Zhao X, Collins RL, Lee WP, et al. (2021) Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies. American Journal of Human Genetics
Ebert P, Audano PA, Zhu Q, et al. (2021) Haplotype-resolved diverse human genomes and integrated analysis of structural variation. Science (New York, N.Y.)
Emani PS, Warrell J, Anticevic A, et al. (2021) Quantum computing at the frontiers of biological sciences. Nature Methods
Bailey MH, Meyerson WU, Dursi LJ, et al. (2020) Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications. 11: 6232
Li B, Yang YT, Capra JA, et al. (2020) Predicting changes in protein thermodynamic stability upon point mutation with deep 3D convolutional neural networks. Plos Computational Biology. 16: e1008291
Kumar S, Harmanci A, Vytheeswaran J, et al. (2020) SVFX: a machine learning framework to quantify the pathogenicity of structural variants. Genome Biology. 21: 274
Bailey MH, Meyerson WU, Dursi LJ, et al. (2020) Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications. 11: 4748
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