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Mark B. Gerstein

Affiliations: 
Molecular Biophysics and Biochemistry Yale University, New Haven, CT 
Area:
Computational Biology and Bioinformatics
Website:
https://sites.gersteinlab.org/research/
Google:
"Mark Gerstein"
Bio:

http://www.gersteinlab.org/

Mean distance: (not calculated yet)
 
SNBCP
Cross-listing: Computational Biology Tree

Parents

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Cyrus H. Chothia grad student 1993 Cambridge
Ruth M. Lynden-Bell grad student 1993 Cambridge
 (Protein recognition: surfaces and conformational change)
Michael Levitt post-doc 1993-1996 Stanford

Children

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Paul Bertone grad student Cambridge (Computational Biology Tree)
Donghoon Lee grad student Yale (Computational Biology Tree)
Werner G. Krebs grad student 1996-2001 Yale (Computational Biology Tree)
Ronald Jansen grad student 2002 Yale (Computational Biology Tree)
Rajdeep Das grad student 2003 Yale (Computational Biology Tree)
Vadim Alexandrov grad student 2004 Yale (Computational Biology Tree)
Dov Greenbaum grad student 2004 Yale (Computational Biology Tree)
Haiyuan Yu grad student 2005 Yale (Computational Biology Tree)
Thomas E. Royce grad student 2007 Yale (Computational Biology Tree)
Michael R. Seringhaus grad student 2007 Yale (Computational Biology Tree)
Samuel C. Flores grad student 2008 Yale (Computational Biology Tree)
Tara A. Gianoulis grad student 2009 Yale (Computational Biology Tree)
Yuk L. Yip grad student 2009 Yale (Computational Biology Tree)
Jiang Du grad student 2010 Yale (Computational Biology Tree)
Hugo Y. Lam grad student 2010 Yale (Computational Biology Tree)
Prianka Patel grad student 2010 Yale (Computational Biology Tree)
Chong Shou grad student 2011 Yale (Computational Biology Tree)
Raymond K. Auerbach grad student 2012 Yale (Computational Biology Tree)
Lukas Habegger grad student 2012 Yale (Computational Biology Tree)
Xinmeng Mu grad student 2012 Yale (Computational Biology Tree)
Jieming Chen grad student 2010-2016 (Computational Biology Tree)
Yu Xia post-doc Yale (Computational Biology Tree)
Gamze Gursoy post-doc 2016- Yale (BME Tree)
Xiangmeng Kong post-doc 2017- Yale
ZhaoLei Zhang post-doc 2001-2004 Yale
Alberto Paccanaro post-doc 2003-2006 Yale (Neurotree)
Jan O. Korbel post-doc 2005-2007 European Molecular Biology Laboratory (EMBL)
Yan Zhang post-doc 2012-2016 Yale
Xu Shi post-doc 2017-2019 Yale (Computational Biology Tree)

Collaborators

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Diego Ariel Galeano collaborator (Neurotree)
BETA: Related publications

Publications

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Zheng S, Thakkar N, Harris HL, et al. (2024) Predicting A/B compartments from histone modifications using deep learning. Iscience. 27: 109570
Gaynor-Gillett SC, Cheng L, Shi M, et al. (2024) Validation of Enhancer Regions in Primary Human Neural Progenitor Cells using Capture STARR-seq. Biorxiv : the Preprint Server For Biology
Emani PS, Liu JJ, Clarke D, et al. (2024) Single-cell genomics and regulatory networks for 388 human brains. Biorxiv : the Preprint Server For Biology
Emani PS, Geradi MN, Gürsoy G, et al. (2023) Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases. Genome Research. 33: 2156-73
Greenbaum D, Gerstein M. (2023) Resisting efficiency's overreach Riverhead Books, 2023. 256 pp. Science (New York, N.Y.). 381: 1162
Greenbaum D, Gerstein M. (2023) Calculating the future Doubleday, 2023. 352 pp. Science (New York, N.Y.). 380: 589
Rozowsky J, Gao J, Borsari B, et al. (2023) The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models. Cell. 186: 1493-1511.e40
Rodriguez-Martin B, Alvarez EG, Baez-Ortega A, et al. (2023) Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition. Nature Genetics
Sarkar E, Chielle E, Gursoy G, et al. (2023) Privacy-preserving cancer type prediction with homomorphic encryption. Scientific Reports. 13: 1661
Rheinbay E, Nielsen MM, Abascal F, et al. (2023) Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nature
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