Mark B. Gerstein
Affiliations: | Molecular Biophysics and Biochemistry | Yale University, New Haven, CT |
Area:
Computational Biology and BioinformaticsWebsite:
https://sites.gersteinlab.org/research/Google:
"Mark Gerstein"Bio:
http://www.gersteinlab.org/
Mean distance: (not calculated yet) | S | N | B | C | P |
Cross-listing: Computational Biology Tree
Parents
Sign in to add mentor| Cyrus H. Chothia | grad student | 1993 | Cambridge | |
| Ruth M. Lynden-Bell | grad student | 1993 | Cambridge | |
| (Protein recognition: surfaces and conformational change) | ||||
| Michael Levitt | post-doc | 1993-1996 | Stanford | |
Children
Sign in to add trainee| Paul Bertone | grad student | Cambridge (Computational Biology Tree) | |
| Donghoon Lee | grad student | Yale (Computational Biology Tree) | |
| Werner G. Krebs | grad student | 1996-2001 | Yale (Computational Biology Tree) |
| Ronald Jansen | grad student | 2002 | Yale (Computational Biology Tree) |
| Rajdeep Das | grad student | 2003 | Yale (Computational Biology Tree) |
| Vadim Alexandrov | grad student | 2004 | Yale (Computational Biology Tree) |
| Dov Greenbaum | grad student | 2004 | Yale (Computational Biology Tree) |
| Haiyuan Yu | grad student | 2005 | Yale (Computational Biology Tree) |
| Thomas E. Royce | grad student | 2007 | Yale (Computational Biology Tree) |
| Michael R. Seringhaus | grad student | 2007 | Yale (Computational Biology Tree) |
| Samuel C. Flores | grad student | 2008 | Yale (Computational Biology Tree) |
| Tara A. Gianoulis | grad student | 2009 | Yale (Computational Biology Tree) |
| Yuk L. Yip | grad student | 2009 | Yale (Computational Biology Tree) |
| Jiang Du | grad student | 2010 | Yale (Computational Biology Tree) |
| Hugo Y. Lam | grad student | 2010 | Yale (Computational Biology Tree) |
| Prianka Patel | grad student | 2010 | Yale (Computational Biology Tree) |
| Chong Shou | grad student | 2011 | Yale (Computational Biology Tree) |
| Raymond K. Auerbach | grad student | 2012 | Yale (Computational Biology Tree) |
| Lukas Habegger | grad student | 2012 | Yale (Computational Biology Tree) |
| Xinmeng Mu | grad student | 2012 | Yale (Computational Biology Tree) |
| Jieming Chen | grad student | 2010-2016 | (Computational Biology Tree) |
| Yu Xia | post-doc | Yale (Computational Biology Tree) | |
| Gamze Gursoy | post-doc | 2016- | Yale (BME Tree) |
| Xiangmeng Kong | post-doc | 2017- | Yale |
| ZhaoLei Zhang | post-doc | 2001-2004 | Yale |
| Alberto Paccanaro | post-doc | 2003-2006 | Yale (Neurotree) |
| Jan O. Korbel | post-doc | 2005-2007 | European Molecular Biology Laboratory (EMBL) |
| Yan Zhang | post-doc | 2012-2016 | Yale |
| Xu Shi | post-doc | 2017-2019 | Yale (Computational Biology Tree) |
BETA: Related publications
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Publications
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| Rozowsky J, Gao J, Borsari B, et al. (2023) The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models. Cell. 186: 1493-1511.e40 |
| Rodriguez-Martin B, Alvarez EG, Baez-Ortega A, et al. (2023) Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition. Nature Genetics |
| Sarkar E, Chielle E, Gursoy G, et al. (2023) Privacy-preserving cancer type prediction with homomorphic encryption. Scientific Reports. 13: 1661 |
| Rheinbay E, Nielsen MM, Abascal F, et al. (2023) Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nature |
| Chen Z, Zhang B, Guo H, et al. (2023) Binding Peptide Generation for MHC Class I Proteins with Deep Reinforcement Learning. Bioinformatics (Oxford, England) |
| Erwin GS, Gürsoy G, Al-Abri R, et al. (2022) Recurrent repeat expansions in human cancer genomes. Nature. 613: 96-102 |
| Greenbaum D, Gerstein M. (2022) GATTACA is still pertinent 25 years later. Nature Genetics |
| Frankish A, Carbonell-Sala S, Diekhans M, et al. (2022) GENCODE: reference annotation for the human and mouse genomes in 2023. Nucleic Acids Research |
| Khanna A, Schaffer V, Gursoy G, et al. (2022) Privacy-preserving Model Training for Disease Prediction Using Federated Learning with Differential Privacy. Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual International Conference. 2022: 1358-1361 |
| Xu J, Pratt HE, Moore JE, et al. (2022) Building integrative functional maps of gene regulation. Human Molecular Genetics |