David Baker

Affiliations: 
Biochemistry University of Washington, Seattle, Seattle, WA 
Area:
protein structure prediction
Website:
http://depts.washington.edu/biowww/pages/faculty-Baker.shtml
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"David Baker"
Bio:

http://www.nasonline.org/member-directory/members/20012424.html
http://www.bakerlab.org/
http://www.hhmi.org/scientists/david-baker
http://www.math.washington.edu/mac/bios/baker_bio.html
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Cross-listing: Computational Biology Tree

Parents

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Randy W. Schekman grad student 1989 UC Berkeley
 (Reconstitution of intercompartmental protein transport in yeast extracts)
David A. Agard post-doc 1990-1993 UCSF

Children

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Jeff Nivala research assistant 2008-2010 University of Washington
Baihan Lin research assistant 2015-2017 University of Washington (Neurotree)
Sergey Ovchinnikov grad student
Hongdi Gu grad student 1993-1997 University of Washington
Viara P. Grantcharova grad student 2000 University of Washington (Computational Biology Tree)
Eric J. Alm grad student 2001 University of Washington (BME Tree)
Richard A. Bonneau grad student 2001 University of Washington (Computational Biology Tree)
Alexandre V. Morozov grad student 2003 University of Washington (Computational Biology Tree)
Sehat Nauli grad student 2003 University of Washington (Computational Biology Tree)
Dylan C. Chivian grad student 2005 University of Washington (Computational Biology Tree)
Gautam Dantas grad student 2005 University of Washington (Computational Biology Tree)
Alexander L. Watters grad student 2005 University of Washington (Computational Biology Tree)
Lin Jiang grad student 2007 University of Washington (Computational Biology Tree)
Lukasz A. Joachimiak grad student 2007 University of Washington (Computational Biology Tree)
Chu Wang grad student 2007 University of Washington (Computational Biology Tree)
Paul M. Murphy grad student 2008 University of Washington (Computational Biology Tree)
Gong Cheng grad student 2002-2008 University of Washington (Computational Biology Tree)
Justin Ashworth grad student 2009 University of Washington (Computational Biology Tree)
Srivatsan Raman grad student 2009 UW Madison (Computational Biology Tree)
William H. Sheffler grad student 2009 University of Washington (Computational Biology Tree)
Alexandre Zanghellini grad student 2009 University of Washington (Computational Biology Tree)
Robert Vernon grad student 2010 University of Washington (Computational Biology Tree)
Justin B. Siegel grad student 2011 University of Washington
James Thompson grad student 2011 University of Washington (Computational Biology Tree)
Elizabeth H. Kellogg grad student 2012 University of Washington (Computational Biology Tree)
Florian Richter grad student 2012 University of Washington (Computational Biology Tree)
Summer B. Thyme grad student 2012 University of Washington (Computational Biology Tree)
Sandrine Boissel grad student 2013 University of Washington (Computational Biology Tree)
Javier Castellanos grad student 2014 University of Washington (Computational Biology Tree)
Patrick Conway grad student 2014 University of Washington (Computational Biology Tree)
Chris King grad student 2014 University of Washington (Computational Biology Tree)
Ray Yu-Ruei Wang grad student 2015 University of Washington (Computational Biology Tree)
Jorgen W Nelson grad student 2012-2018 University of Washington (Computational Biology Tree)
Zibo Chen grad student 2013-2018 University of Washington
Hao Shen grad student 2015-2019 University of Washington (Computational Biology Tree)
Eric Althoff post-doc University of Washington (Computational Biology Tree)
Ingemar Andre post-doc University of Washington (Computational Biology Tree)
Yih-En Andrew Ban post-doc University of Washington (Computational Biology Tree)
Patrick Barth post-doc University of Washington (Computational Biology Tree)
Peter Bowers post-doc University of Washington (Computational Biology Tree)
Phil Bradley post-doc University of Washington (Computational Biology Tree)
Christopher Bystroff post-doc University of Washington (Computational Biology Tree)
Ian Davis post-doc University of Washington (Computational Biology Tree)
Jeffrey J. Gray post-doc University of Washington (Computational Biology Tree)
Jim Havranek post-doc University of Washington (Computational Biology Tree)
John Karanicolas post-doc University of Washington (Computational Biology Tree)
Tanja Kortemme post-doc University of Washington (Computational Biology Tree)
Brian Kuhlman post-doc University of Washington (Computational Biology Tree)
Andrew Leaver-Fay post-doc University of Washington (Computational Biology Tree)
Yuan Liu post-doc University of Science & Technology of China
Jens Meiler post-doc University of Washington
Kira Misura post-doc University of Washington (Computational Biology Tree)
Gabriel J. Rocklin post-doc University of Washington
Daniella Roethlisberger post-doc University of Washington (Computational Biology Tree)
Carol A. Rohl post-doc University of Washington (Computational Biology Tree)
Ora Schueler-Furman post-doc University of Washington (Computational Biology Tree)
Yifan Song post-doc (Physics Tree)
Vanita Sood post-doc University of Washington (Computational Biology Tree)
Vesteinn Thorsson post-doc University of Washington (Computational Biology Tree)
Jerry Tsai post-doc University of Washington (Computational Biology Tree)
Bjorn Wallner post-doc University of Washington (Computational Biology Tree)
William Wedemeyer post-doc University of Washington (Computational Biology Tree)
Andrew Wollacott post-doc University of Washington (Computational Biology Tree)
Yasuo Yoshikuni post-doc University of Washington (Computational Biology Tree)
Chunfu Xu post-doc 2014- University of Washington
Ralph A. Cacho post-doc 2015- University of Washington
Peilong Lu post-doc 2015- University of Washngton, Seattle
Shane Justin Caldwell post-doc 2017- University of Washington (Computational Biology Tree)
Kevin W. Plaxco post-doc 1997-1998 University of Washington
Rhiju Das post-doc 2005-2008 University of Washington
Po-Ssu Huang post-doc 2006-2011 University of Washington
Sagar Khare post-doc 2005-2012 University of Washington (Physics Tree)
Firas Khatib post-doc 2008-2013 University of Washington
Lucas G. Nivon post-doc 2008-2014 University of Washington
Jeremy H. Mills post-doc 2015 University of Washington
Christopher D. Bahl post-doc 2012-2017 University of Washington (Microtree)
Vladimir Yarov-Yarovoy research scientist 2001-2010 University of Washington (Computational Biology Tree)
BETA: Related publications

Publications

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Goodall EF, Leach V, Wang C, et al. (2019) Age-Associated mRNA and miRNA Expression Changes in the Blood-Brain Barrier. International Journal of Molecular Sciences. 20
Hao Y, Baker D, Ten Dijke P. (2019) TGF-β-Mediated Epithelial-Mesenchymal Transition and Cancer Metastasis. International Journal of Molecular Sciences. 20
Wu Q, Peng Z, Anishchenko I, et al. (2019) Protein contact prediction using metagenome sequence data and residual neural networks. Bioinformatics (Oxford, England)
Koepnick B, Flatten J, Husain T, et al. (2019) De novo protein design by citizen scientists. Nature
Suriyamurthy S, Baker D, Ten Dijke P, et al. (2019) Epigenetic Reprogramming of TGF-β Signaling in Breast Cancer. Cancers. 11
Mohan K, Ueda G, Kim AR, et al. (2019) Topological control of cytokine receptor signaling induces differential effects in hematopoiesis. Science (New York, N.Y.). 364
Cao L, Yu B, Kong D, et al. (2019) Functional expression and characterization of the envelope glycoprotein E1E2 heterodimer of hepatitis C virus. Plos Pathogens. 15: e1007759
Boyken SE, Benhaim MA, Busch F, et al. (2019) De novo design of tunable, pH-driven conformational changes. Science (New York, N.Y.). 364: 658-664
Dang LT, Miao Y, Ha A, et al. (2019) Receptor subtype discrimination using extensive shape complementary designed interfaces. Nature Structural & Molecular Biology
Patel A, Perrin AJ, Flynn HR, et al. (2019) Cyclic AMP signalling controls key components of malaria parasite host cell invasion machinery. Plos Biology. 17: e3000264
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