Rhiju Das

Affiliations: 
Biochemistry and Physics Stanford University, Palo Alto, CA 
Area:
predictive understanding of how biopolymer sequences code for biopolymer structures, with an initial focus on RNA
Website:
http://www.stanford.edu/~rhiju/index.html
Google:
"Rhiju Das"
Bio:

http://www.stanford.edu/~rhiju/rhiju_cv.pdf

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SNBCP
Cross-listing: Computational Biology Tree

Parents

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Sebastian Doniach grad student 2001-2005 Stanford (Physics Tree)
Daniel Herschlag grad student 2001-2005 Department of Biochemistry Stanford University School of Medicine
 (Visualizing Forces and Folds of Self-Assembling RNA Molecules)
David Baker post-doc 2005-2008 University of Washington
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Publications

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Liu X, Sun T, Shcherbina A, et al. (2021) Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis. Nature Communications. 12: 2165
Leppek K, Byeon GW, Kladwang W, et al. (2021) Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics. Biorxiv : the Preprint Server For Biology
Byeon GW, Cenik ES, Jiang L, et al. (2021) Functional and structural basis of extreme conservation in vertebrate 5' untranslated regions. Nature Genetics
Wayment-Steele HK, Kim DS, Choe CA, et al. (2020) Theoretical basis for stabilizing messenger RNA through secondary structure design. Biorxiv : the Preprint Server For Biology
Kappel K, Zhang K, Su Z, et al. (2020) Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures. Nature Methods. 17: 699-707
Leman JK, Weitzner BD, Lewis SM, et al. (2020) Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature Methods
Kladwang W, Topkar V, Liu B, et al. (2020) Anomalous reverse transcription through chemical modifications in polyadenosine stretches. Biochemistry
Miao Z, Adamiak RW, Antczak M, et al. (2020) RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers. Rna (New York, N.Y.)
Zhang K, Li S, Kappel K, et al. (2019) Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 Å resolution. Nature Communications. 10: 5511
Magnus M, Kappel K, Das R, et al. (2019) RNA 3D structure prediction guided by independent folding of homologous sequences. Bmc Bioinformatics. 20: 512
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