☰ Chemistry Tree

Thomas R. Krugh

Affiliations:

University of Rochester, Rochester, NY

Area:

Physical Chemistry, Biochemistry

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grad student

2012

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Shankar N, Xia T, Kennedy SD, et al. (2007) NMR reveals the absence of hydrogen bonding in adjacent UU and AG mismatches in an isolated internal loop from ribosomal RNA. Biochemistry. 46: 12665-78
Chen G, Kierzek R, Yildirim I, et al. (2007) Stacking effects on local structure in RNA: changes in the structure of tandem GA pairs when flanking GC pairs are replaced by isoG-isoC pairs. The Journal of Physical Chemistry. B. 111: 6718-27
Tolbert BS, Kennedy SD, Schroeder SJ, et al. (2007) NMR structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2: probing the structural features that shape the thermodynamic stability of GA pairs. Biochemistry. 46: 1511-22
Shankar N, Kennedy SD, Chen G, et al. (2006) The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50s ribosomal subunits. Biochemistry. 45: 11776-89
Chen G, Kennedy SD, Qiao J, et al. (2006) An alternating sheared AA pair and elements of stability for a single sheared purine-purine pair flanked by sheared GA pairs in RNA. Biochemistry. 45: 6889-903
Chen G, Znosko BM, Kennedy SD, et al. (2005) Solution structure of an RNA internal loop with three consecutive sheared GA pairs. Biochemistry. 44: 2845-56
Znosko BM, Kennedy SD, Wille PC, et al. (2004) Structural features and thermodynamics of the J4/5 loop from the Candida albicans and Candida dubliniensis group I introns. Biochemistry. 43: 15822-37
Schroeder SJ, Fountain MA, Kennedy SD, et al. (2003) Thermodynamic stability and structural features of the J4/5 loop in a Pneumocystis carinii group I intron. Biochemistry. 42: 14184-96
Znosko BM, Barnes TW, Krugh TR, et al. (2003) NMR studies of DNA single strands and DNA:RNA hybrids with and without 1-propynylation at C5 of oligopyrimidines. Journal of the American Chemical Society. 125: 6090-7
Znosko BM, Burkard ME, Krugh TR, et al. (2002) Molecular recognition in purine-rich internal loops: thermodynamic, structural, and dynamic consequences of purine for adenine substitutions in 5'(rGGCAAGCCU)2. Biochemistry. 41: 14978-87

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