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Daniel Nathans grad student 1979 Johns Hopkins
 (Construction and characterization of SV40 mutants with single base pair substitutions at the origin of DNA synthesis.)
David Botstein post-doc 1979-1982 MIT
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Shortle D. (2009) One sequence plus one mutation equals two folds. Proceedings of the National Academy of Sciences of the United States of America. 106: 21011-2
Gebel EB, Shortle D. (2007) Characterization of denatured proteins using residual dipolar couplings. Methods in Molecular Biology (Clifton, N.J.). 350: 39-48
Ohnishi S, Kamikubo H, Onitsuka M, et al. (2006) Conformational preference of polyglycine in solution to elongated structure. Journal of the American Chemical Society. 128: 16338-44
Gebel EB, Ruan K, Tolman JR, et al. (2006) Multiple alignment tensors from a denatured protein. Journal of the American Chemical Society. 128: 9310-1
Fang Q, Shortle D. (2006) Protein refolding in silico with atom-based statistical potentials and conformational search using a simple genetic algorithm. Journal of Molecular Biology. 359: 1456-67
Fang Q, Shortle D. (2005) Enhanced sampling near the native conformation using statistical potentials for local side-chain and backbone interactions. Proteins. 60: 97-102
Fang Q, Shortle D. (2005) A consistent set of statistical potentials for quantifying local side-chain and backbone interactions. Proteins. 60: 90-6
Ohnishi S, Lee AL, Edgell MH, et al. (2004) Direct demonstration of structural similarity between native and denatured eglin C. Biochemistry. 43: 4064-70
Fang Q, Shortle D. (2003) Prediction of protein structure by emphasizing local side-chain/backbone interactions in ensembles of turn fragments. Proteins. 53: 486-90
Ohnishi S, Shortle D. (2003) Effects of denaturants and substitutions of hydrophobic residues on backbone dynamics of denatured staphylococcal nuclease. Protein Science : a Publication of the Protein Society. 12: 1530-7
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