Brandon S. Zerbe, Ph.D.
Affiliations: | 2012 | Boston University, Boston, MA, United States |
Area:
General Biophysics, BiochemistryGoogle:
"Brandon Zerbe"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Sandor Vajda | grad student | 2012 | Boston University | |
| (Computational characterization of protein hot spots.) | ||||
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Publications
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| Padhorny D, Kazennov A, Zerbe BS, et al. (2016) Protein-protein docking by fast generalized Fourier transforms on 5D rotational manifolds. Proceedings of the National Academy of Sciences of the United States of America |
| Golden MS, Cote SM, Sayeg M, et al. (2013) Comprehensive experimental and computational analysis of binding energy hot spots at the NF-κB essential modulator/IKKβ protein-protein interface. Journal of the American Chemical Society. 135: 6242-56 |
| Bohnuud T, Beglov D, Ngan C, et al. (2013) 89 Computational mapping reveals effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde Journal of Biomolecular Structure and Dynamics. 31: 57-57 |
| Zerbe BS, Hall DR, Vajda S, et al. (2012) Relationship between hot spot residues and ligand binding hot spots in protein-protein interfaces. Journal of Chemical Information and Modeling. 52: 2236-44 |
| Bohnuud T, Beglov D, Ngan CH, et al. (2012) Computational mapping reveals dramatic effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde. Nucleic Acids Research. 40: 7644-52 |
| Hall DR, Ngan CH, Zerbe BS, et al. (2012) Hot spot analysis for driving the development of hits into leads in fragment-based drug discovery. Journal of Chemical Information and Modeling. 52: 199-209 |
| Ngan CH, Hall DR, Zerbe B, et al. (2012) FTSite: high accuracy detection of ligand binding sites on unbound protein structures. Bioinformatics (Oxford, England). 28: 286-7 |
| Buhrman G, O'Connor C, Zerbe B, et al. (2011) Analysis of binding site hot spots on the surface of Ras GTPase. Journal of Molecular Biology. 413: 773-89 |
| Chuang GY, Mehra-Chaudhary R, Ngan CH, et al. (2010) Domain motion and interdomain hot spots in a multidomain enzyme. Protein Science : a Publication of the Protein Society. 19: 1662-72 |
| Cowen CC, Richman AE, Crosby DE, et al. (2006) Geometric properties of linear fractional maps Indiana University Mathematics Journal. 55: 553-577 |