Patricia C. Babbitt

Biophysics University of California, San Francisco, San Francisco, CA 
Bioinformatics Biology, Biochemistry, General Biophysics
"Patricia Babbitt"

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George L. Kenyon grad student 1988 UCSF
 (Sequence Determination, Expression, and Site-directed Mutagenesis of Creatine Kinase.)
Irwin D. Tack Kuntz grad student 1988 UCSF


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Walter R. Novak grad student 2004 UCSF
Shoshana Brown grad student 2005 UCSF (Physics Tree)
Courtney Harper grad student 2007 UCSF (Physics Tree)
Benjamin J. Polacco grad student 2007 UCSF (Physics Tree)
Ranyee A. Chiang grad student 2008 UCSF (Physics Tree)
Ray A. Nagatani grad student 2008 UCSF (Physics Tree)
Alexandra M. Schnoes grad student 2008 UCSF (Physics Tree)
Holly J. Atkinson grad student 2009 UCSF (Physics Tree)
Alan E. Barber grad student 2012 UCSF (Physics Tree)
Margy E. Glasner post-doc
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Baas BJ, Medellin BP, LeVieux JA, et al. (2021) Kinetic and Structural Analysis of Two Linkers in the Tautomerase Superfamily: Analysis and Implications. Biochemistry
Pinney MM, Mokhtari DA, Akiva E, et al. (2021) Parallel molecular mechanisms for enzyme temperature adaptation. Science (New York, N.Y.). 371
Holliday GL, Brown SD, Mischel D, et al. (2020) A strategy for large-scale comparison of evolutionary- and reaction-based classifications of enzyme function. Database : the Journal of Biological Databases and Curation. 2020
Medellin BP, Lancaster EB, Brown S, et al. (2020) Structural Basis for the Asymmetry of a 4-Oxalocrotonate Tautomerase Trimer. Biochemistry
Zhou N, Jiang Y, Bergquist TR, et al. (2019) The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens. Genome Biology. 20: 244
Baas BJ, Medellin BP, LeVieux J, et al. (2019) Structural, Kinetic, and Mechanistic Analysis of an Asymmetric 4-Oxalocrotonate Tautomerase Trimer. Biochemistry
Copp JN, Anderson DW, Akiva E, et al. (2019) Exploring the sequence, function, and evolutionary space of protein superfamilies using sequence similarity networks and phylogenetic reconstructions. Methods in Enzymology. 620: 315-347
Mitchell AL, Attwood TK, Babbitt PC, et al. (2018) InterPro in 2019: improving coverage, classification and access to protein sequence annotations. Nucleic Acids Research
Holliday GL, Akiva E, Meng EC, et al. (2018) Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain. Methods in Enzymology. 606: 1-71
Yunes JM, Babbitt PC. (2018) Effusion: Prediction of Protein Function from Sequence Similarity Networks. Bioinformatics (Oxford, England)
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