James J. Havranek, Ph.D.
Affiliations: | 2003 | Stanford University, Palo Alto, CA |
Area:
General BiophysicsGoogle:
"James Havranek"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Pehr Harbury | grad student | 2003 | Stanford | |
| (Introducing specificity into protein design.) | ||||
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Publications
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| Joyce AP, Havranek JJ. (2018) Deciphering the protein-DNA code of bacterial winged helix-turn-helix transcription factors. Quantitative Biology (Beijing, China). 6: 68-84 |
| Bodmer NK, Havranek JJ. (2018) Efficient minimization of multipole electrostatic potentials in torsion space. Plos One. 13: e0195578 |
| Chang YK, Srivastava Y, Hu C, et al. (2016) Quantitative profiling of selective Sox/POU pairing on hundreds of sequences in parallel by Coop-seq. Nucleic Acids Research |
| Zhang C, Myers CA, Qi Z, et al. (2015) Redesign of the monomer-monomer interface of Cre recombinase yields an obligate heterotetrameric complex. Nucleic Acids Research. 43: 9076-85 |
| Joyce AP, Zhang C, Bradley P, et al. (2015) Structure-based modeling of protein: DNA specificity. Briefings in Functional Genomics. 14: 39-49 |
| Borgo B, Havranek JJ. (2015) Computer-aided design of a catalyst for Edman degradation utilizing substrate-assisted catalysis Protein Science. 24: 571-579 |
| Borgo B, Havranek JJ. (2014) Motif-directed redesign of enzyme specificity. Protein Science : a Publication of the Protein Society. 23: 312-20 |
| Lyskov S, Chou FC, Conchúir SÓ, et al. (2013) Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE). Plos One. 8: e63906 |
| Leaver-Fay A, O'Meara MJ, Tyka M, et al. (2013) Scientific benchmarks for guiding macromolecular energy function improvement. Methods in Enzymology. 523: 109-43 |
| Borgo B, Havranek JJ. (2012) Automated selection of stabilizing mutations in designed and natural proteins. Proceedings of the National Academy of Sciences of the United States of America. 109: 1494-9 |