Rajarsi Gupta, Ph.D.

Affiliations: 
2006 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Medical Biophysics, Biochemistry
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Parents

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William W. Mantulin grad student 2006 UIUC
 (Frequency-domain near-infrared spectroscopy in the human brain.)

Children

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Yuwei Zhang grad student (Computational Biology Tree)
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Publications

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Jahangir CA, Page DB, Broeckx G, et al. (2024) Image-based multiplex immune profiling of cancer tissues: translational implications. A report of the International Immuno-oncology Biomarker Working Group on Breast Cancer. The Journal of Pathology
Kaczmarzyk JR, O'Callaghan A, Inglis F, et al. (2024) Open and reusable deep learning for pathology with WSInfer and QuPath. Npj Precision Oncology. 8: 9
Kapse S, Das S, Zhang J, et al. (2023) Attention De-sparsification Matters: Inducing diversity in digital pathology representation learning. Medical Image Analysis. 93: 103070
Hart S, Garcia V, Dudgeon SN, et al. (2023) Initial interactions with the FDA on developing a validation dataset as a medical device development tool. The Journal of Pathology
Thagaard J, Broeckx G, Page DB, et al. (2023) Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer: a report of the international immuno-oncology biomarker working group. The Journal of Pathology
Page DB, Broeckx G, Jahangir CA, et al. (2023) Spatial analyses of immune cell infiltration in cancer: current methods and future directions. A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer. The Journal of Pathology
Kaczmarzyk JR, Gupta R, Kurc TM, et al. (2023) ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification. Computer Methods and Programs in Biomedicine. 239: 107631
Elfer K, Dudgeon S, Garcia V, et al. (2022) Pilot study to evaluate tools to collect pathologist annotations for validating machine learning algorithms. Journal of Medical Imaging (Bellingham, Wash.). 9: 047501
Fassler DJ, Torre-Healy LA, Gupta R, et al. (2022) Spatial Characterization of Tumor-Infiltrating Lymphocytes and Breast Cancer Progression. Cancers. 14
Abousamra S, Gupta R, Hou L, et al. (2022) Deep Learning-Based Mapping of Tumor Infiltrating Lymphocytes in Whole Slide Images of 23 Types of Cancer. Frontiers in Oncology. 11: 806603
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